Co-expression analysis

Gene ID Contig25441_at
Gene name
Homology with ArabidopsisSimilar to At3g14630: CYP72A9 (HF=3e-14)
Module size 45 genes
NF 0.20
%ile 24.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.98100.00.87Contig25441_atContig25441--3e-14At3g14630CYP72A9O.I.H.G.S.X.
0.4963.70.88HK05P12r_x_atHK05P12r--2e+0At2g06925PLA2-ALPHAO.I.H.G.S.X.
0.4559.30.90Contig9293_atContig9293--9e-16At2g43770transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.3950.50.91Contig4085_atContig4085--4e-4At2g37120DNA-binding S1FA family proteinO.I.H.G.S.X.
0.3950.50.93HK06E16r_s_atHK06E16r--3e+0At5g51520invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.3545.10.91Contig20361_atContig20361--1e+0At5g48560basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.3443.60.87Contig22937_atContig22937--6e-4At4g33530KUP5O.I.H.G.S.X.
0.3342.60.93HVSMEl0002L06r2_atHVSMEl0002L06r2--3e-1At4g19270unknown proteinO.I.H.G.S.X.
0.3240.30.92Contig378_s_atContig378--2e+0At2g31180MYB14 (MYB DOMAIN PROTEIN 14)O.I.H.G.S.X.
0.3037.00.87Contig16153_atContig16153--1e+0At1g27760interferon-related developmental regulator family protein / IFRD protein familyO.I.H.G.S.X.
0.2935.50.89EBpi01_SQ005_N10_atEBpi01_SQ005_N10--4e+0At5g60330unknown proteinO.I.H.G.S.X.
0.2935.50.94Contig18021_atContig18021--9e-5At1g77550protein binding / tubulin-tyrosine ligaseO.I.H.G.S.X.
0.2835.50.91Contig26136_atContig26136--5e+0At3g46320histone H4O.I.H.G.S.X.
0.2732.10.89Contig13243_s_atContig13243--4e+0At2g18690unknown proteinO.I.H.G.S.X.
0.2630.40.93Contig18494_atContig18494--1e-2At4g35290GLUR2 (GLUTAMATE RECEPTOR 2)O.I.H.G.S.X.
0.2630.40.93Contig9934_atContig9934--3e-8At5g63860UVR8 (UVB-RESISTANCE 8)O.I.H.G.S.X.
0.2528.90.91HZ52M04r_x_atHZ52M04r--4e+0At2g16385unknown proteinO.I.H.G.S.X.
0.2528.90.93Contig4136_atContig4136--2e-28At4g02620vacuolar ATPase subunit F family proteinO.I.H.G.S.X.
0.2427.20.89Contig13171_atContig13171--3e+0At5g23405high mobility group (HMG1/2) family proteinO.I.H.G.S.X.
0.2326.10.87HT11A16u_s_atHT11A16u--2e+0At1g64080unknown proteinO.I.H.G.S.X.
0.2326.10.95Contig2341_x_atContig2341--5e+0At4g14380unknown proteinO.I.H.G.S.X.
0.2326.10.92HA12A14u_atHA12A14u--2e+0At5g61110protein binding / zinc ion bindingO.I.H.G.S.X.
0.2326.10.93HU08K12u_x_atHU08K12u--9e-1At5g63225-O.I.H.G.S.X.
0.2224.20.93Contig11426_atContig11426--2e+0At3g48450nitrate-responsive NOI protein, putativeO.I.H.G.S.X.
0.2224.20.92Contig9609_atContig9609--2e-2At1g05205unknown proteinO.I.H.G.S.X.
0.2224.20.90Contig5817_atContig5817--3e-3At2g40660tRNA-binding region domain-containing proteinO.I.H.G.S.X.
0.2224.20.90HVSMEi0003D03r2_atHVSMEi0003D03r2--1e+1At5g51510unknown proteinO.I.H.G.S.X.
0.2122.60.92Contig22325_atContig22325--1e+0At5g15290integral membrane family proteinO.I.H.G.S.X.
0.2122.60.91Contig12001_atContig12001--1e-1At5g57015ckl12 (Casein Kinase I-like 12)O.I.H.G.S.X.
0.2021.10.94HVSMEb0010L13r2_atHVSMEb0010L13r2--1e+0At5g19970unknown proteinO.I.H.G.S.X.
0.1919.60.93Contig6404_atContig6404--4e-20At5g18110NCBP (NOVEL CAP-BINDING PROTEIN)O.I.H.G.S.X.
0.1716.90.90rbags7l20_s_atrbags7l20--7e-1At2g23340AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.1615.30.95Contig10700_atContig10700--2e+0At4g15990unknown proteinO.I.H.G.S.X.
0.1514.10.97HU14M19u_s_atHU14M19u--3e+0At1g7406060S ribosomal protein L6 (RPL6B)O.I.H.G.S.X.
0.1514.10.93Contig6821_atContig6821--8e-47At2g21270ubiquitin fusion degradation UFD1 family proteinO.I.H.G.S.X.
0.1514.10.97HA27O10r_s_atHA27O10r--4e+0At1g50430DWF5 (DWARF 5)O.I.H.G.S.X.
0.1412.90.91Contig7384_atContig7384--2e-9At3g15680zinc finger (Ran-binding) family proteinO.I.H.G.S.X.
0.1412.90.93Contig18852_atContig18852--1e+0At1g31630AGL86 (AGAMOUS-LIKE 86)O.I.H.G.S.X.
0.1412.90.91Contig477_atContig477--1e+0At4g10970unknown proteinO.I.H.G.S.X.
0.1311.60.93Contig9040_atContig9040--3e-3At5g07600oleosin / glycine-rich proteinO.I.H.G.S.X.
0.1311.60.89Contig15227_s_atContig15227--6e-1At1g77350unknown proteinO.I.H.G.S.X.
0.1210.40.95Contig15453_s_atContig15453--7e+0Atcg00050-O.I.H.G.S.X.
0.108.40.94Contig12886_atContig12886--7e-8At1g71410protein kinase family proteinO.I.H.G.S.X.
0.097.40.94HVSMEc0011O22r2_atHVSMEc0011O22r2--9e-2At3g17500F-box family proteinO.I.H.G.S.X.
0.054.10.87HW05M23u_atHW05M23u--2e+0At2g21195unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.796.9GSM398251Martin_0d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.595.1GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
3.595.1GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
2.993.4GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.792.7GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.792.7GSM398263HS41-1_0d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.591.9GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.390.9GSM398261HS41-1_0d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.390.9GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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