Co-expression analysis

Gene ID	Contig25441_at
Gene name
Homology with Arabidopsis	Similar to At3g14630: CYP72A9 (HF=3e-14)
Module size	45 genes
NF	0.20
%ile	24.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	0.87	Contig25441_at	Contig25441	-	-	3e-14	At3g14630	CYP72A9	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.88	HK05P12r_x_at	HK05P12r	-	-	2e+0	At2g06925	PLA2-ALPHA	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.90	Contig9293_at	Contig9293	-	-	9e-16	At2g43770	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.91	Contig4085_at	Contig4085	-	-	4e-4	At2g37120	DNA-binding S1FA family protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.93	HK06E16r_s_at	HK06E16r	-	-	3e+0	At5g51520	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.91	Contig20361_at	Contig20361	-	-	1e+0	At5g48560	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.87	Contig22937_at	Contig22937	-	-	6e-4	At4g33530	KUP5	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.93	HVSMEl0002L06r2_at	HVSMEl0002L06r2	-	-	3e-1	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.92	Contig378_s_at	Contig378	-	-	2e+0	At2g31180	MYB14 (MYB DOMAIN PROTEIN 14)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.87	Contig16153_at	Contig16153	-	-	1e+0	At1g27760	interferon-related developmental regulator family protein / IFRD protein family	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.89	EBpi01_SQ005_N10_at	EBpi01_SQ005_N10	-	-	4e+0	At5g60330	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.94	Contig18021_at	Contig18021	-	-	9e-5	At1g77550	protein binding / tubulin-tyrosine ligase	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.91	Contig26136_at	Contig26136	-	-	5e+0	At3g46320	histone H4	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.89	Contig13243_s_at	Contig13243	-	-	4e+0	At2g18690	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.93	Contig18494_at	Contig18494	-	-	1e-2	At4g35290	GLUR2 (GLUTAMATE RECEPTOR 2)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.93	Contig9934_at	Contig9934	-	-	3e-8	At5g63860	UVR8 (UVB-RESISTANCE 8)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.91	HZ52M04r_x_at	HZ52M04r	-	-	4e+0	At2g16385	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.93	Contig4136_at	Contig4136	-	-	2e-28	At4g02620	vacuolar ATPase subunit F family protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.89	Contig13171_at	Contig13171	-	-	3e+0	At5g23405	high mobility group (HMG1/2) family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.87	HT11A16u_s_at	HT11A16u	-	-	2e+0	At1g64080	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig2341_x_at	Contig2341	-	-	5e+0	At4g14380	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.92	HA12A14u_at	HA12A14u	-	-	2e+0	At5g61110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.93	HU08K12u_x_at	HU08K12u	-	-	9e-1	At5g63225	-	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.93	Contig11426_at	Contig11426	-	-	2e+0	At3g48450	nitrate-responsive NOI protein, putative	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.92	Contig9609_at	Contig9609	-	-	2e-2	At1g05205	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.90	Contig5817_at	Contig5817	-	-	3e-3	At2g40660	tRNA-binding region domain-containing protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.90	HVSMEi0003D03r2_at	HVSMEi0003D03r2	-	-	1e+1	At5g51510	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.92	Contig22325_at	Contig22325	-	-	1e+0	At5g15290	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.91	Contig12001_at	Contig12001	-	-	1e-1	At5g57015	ckl12 (Casein Kinase I-like 12)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	HVSMEb0010L13r2_at	HVSMEb0010L13r2	-	-	1e+0	At5g19970	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.93	Contig6404_at	Contig6404	-	-	4e-20	At5g18110	NCBP (NOVEL CAP-BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.90	rbags7l20_s_at	rbags7l20	-	-	7e-1	At2g23340	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.95	Contig10700_at	Contig10700	-	-	2e+0	At4g15990	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.97	HU14M19u_s_at	HU14M19u	-	-	3e+0	At1g74060	60S ribosomal protein L6 (RPL6B)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.93	Contig6821_at	Contig6821	-	-	8e-47	At2g21270	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.97	HA27O10r_s_at	HA27O10r	-	-	4e+0	At1g50430	DWF5 (DWARF 5)	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.91	Contig7384_at	Contig7384	-	-	2e-9	At3g15680	zinc finger (Ran-binding) family protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.93	Contig18852_at	Contig18852	-	-	1e+0	At1g31630	AGL86 (AGAMOUS-LIKE 86)	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.91	Contig477_at	Contig477	-	-	1e+0	At4g10970	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.93	Contig9040_at	Contig9040	-	-	3e-3	At5g07600	oleosin / glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.89	Contig15227_s_at	Contig15227	-	-	6e-1	At1g77350	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.95	Contig15453_s_at	Contig15453	-	-	7e+0	Atcg00050	-	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.94	Contig12886_at	Contig12886	-	-	7e-8	At1g71410	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.94	HVSMEc0011O22r2_at	HVSMEc0011O22r2	-	-	9e-2	At3g17500	F-box family protein	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.87	HW05M23u_at	HW05M23u	-	-	2e+0	At2g21195	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	96.9	GSM398251	Martin_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.5	95.1	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
3.5	95.1	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
2.9	93.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.7	92.7	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.7	92.7	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5	91.9	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.3	90.9	GSM398261	HS41-1_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.3	90.9	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage