Co-expression analysis

Gene ID	Contig25390_at
Gene name
Homology with Arabidopsis	Similar to At1g06330: copper-binding family protein (HF=6e+0)
Module size	6 genes
NF	0.65
%ile	86.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.92	Contig25390_at	Contig25390	-	-	6e+0	At1g06330	copper-binding family protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.88	Contig15846_at	Contig15846	-	-	3e+0	At5g27910	NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8)	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.91	Contig17954_at	Contig17954	-	-	2e+0	At3g63050	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.93	Contig18560_at	Contig18560	-	-	2e-9	At3g24590	PLSP1 (plastidic type I signal peptidase 1)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.92	EBro04_SQ003_G13_at	EBro04_SQ003_G13	-	-	2e+0	At5g44450	methyltransferase	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.92	HVSMEa0003G10r2_at	HVSMEa0003G10r2	-	-	7e-1	At3g50070	CYCD3	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.8	99.5	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
12.7	99.4	GSM311258	hsp5_without_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.0	98.9	GSM311257	hsp5_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.4	98.8	GSM311256	hsp5_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.5	98.6	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
6.7	98.3	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.8	97.0	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.3	96.4	GSM130804	JA, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
4.3	96.4	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
4.1	96.2	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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