Co-expression analysis

Gene ID	Contig25371_at
Gene name
Homology with Arabidopsis	Similar to At4g17170: RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) (HF=4e+0)
Module size	6 genes
NF	0.28
%ile	36.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.70	Contig25371_at	Contig25371	-	-	4e+0	At4g17170	RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.88	Contig4991_s_at	Contig4991	-	-	1e-9	At1g79440	ALDH5F1	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.88	Contig5876_at	Contig5876	-	-	2e-4	At4g34138	UGT73B1 (UDP-glucosyl transferase 73B1)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.75	HV10D22r_at	HV10D22r	-	-	3e+0	At4g19480	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.86	rbah29m06_s_at	rbah29m06	-	-	4e-1	At1g54050	17.4 kDa class III heat shock protein (HSP17.4-CIII)	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.88	Contig7997_at	Contig7997	-	-	1e-4	At1g09740	ethylene-responsive protein, putative	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	97.4	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.0	97.2	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.6	96.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.8	93.1	GSM311259	kara_with_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
2.7	92.7	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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