Co-expression analysis

Gene ID Contig25251_at
Gene name
Homology with ArabidopsisSimilar to At4g15150: glycine-rich protein (HF=4e-1)
Module size 6 genes
NF 0.42
%ile 58.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4458.90.95Contig25251_atContig25251--4e-1At4g15150glycine-rich proteinO.I.H.G.S.X.
0.5066.90.97Contig10647_atContig10647--2e-46At2g20930-O.I.H.G.S.X.
0.4661.00.96Contig8141_atContig8141--2e+0At5g07950unknown proteinO.I.H.G.S.X.
0.4661.00.96Contig8766_atContig8766--8e-7At4g12130aminomethyltransferaseO.I.H.G.S.X.
0.3545.10.96Contig9632_atContig9632--1e-1At1g78370ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)O.I.H.G.S.X.
0.2630.40.96Contig13332_atContig13332--2e+0At1g68280thioesterase-relatedO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7187.10.92Contig20590_atContig20590--1e+0At3g52520unknown proteinO.I.H.G.S.X.
0.5066.90.96Contig8565_atContig8565--7e-10At3g13224RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.4762.20.93Contig15395_s_atContig15395--4e-3At3g55646unknown proteinO.I.H.G.S.X.
0.4762.20.96Contig11284_atContig11284--9e-6At2g22475GEM (GL2-EXPRESSION MODULATOR)O.I.H.G.S.X.
0.4762.20.96Contig6890_atContig6890--4e+0At5g34581hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.4661.00.96Contig11854_atContig11854--5e-11At1g50360VIIIAO.I.H.G.S.X.
0.4458.90.92Contig16814_atContig16814--6e-5At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)O.I.H.G.S.X.
0.4458.90.95Contig12169_atContig12169--2e+0At4g25640MATE efflux family proteinO.I.H.G.S.X.
0.4053.10.93Contig1207_atContig1207--2e-55At5g56000heat shock protein 81-4 (HSP81-4)O.I.H.G.S.X.
0.4053.10.97Contig12594_atContig12594--3e+0At5g11990proline-rich family proteinO.I.H.G.S.X.
0.3647.10.97rbags1e22_s_atrbags1e22--3e-1At3g56360unknown proteinO.I.H.G.S.X.
0.3342.60.94Contig1446_s_atContig1446--3e-3At4g10610CID12O.I.H.G.S.X.
0.3342.60.95Contig5078_atContig5078--1e-10At1g60900U2 snRNP auxiliary factor large subunit, putativeO.I.H.G.S.X.
0.3342.60.95Contig20398_atContig20398--8e-3At2g42620MAX2 (MORE AXILLARY BRANCHES 2)O.I.H.G.S.X.
0.3342.60.96Contig11618_atContig11618--5e+0At2g11890adenylate cyclaseO.I.H.G.S.X.
0.3138.60.94Contig24074_atContig24074--2e+0At2g34185unknown proteinO.I.H.G.S.X.
0.3138.60.95Contig17437_atContig17437--6e+0At2g27250CLV3 (CLAVATA3)O.I.H.G.S.X.
0.3138.60.96Contig24555_atContig24555--1e+0At2g45070SEC61 BETAO.I.H.G.S.X.
0.3037.00.95Contig15241_atContig15241--6e+0At3g44280unknown proteinO.I.H.G.S.X.
0.2935.50.95Contig9294_atContig9294--2e+0At3g22630PBD1 (20S PROTEASOME BETA SUBUNIT D1)O.I.H.G.S.X.
0.2935.50.96Contig13264_atContig13264--2e+0At3g55860unknown proteinO.I.H.G.S.X.
0.2935.50.96Contig2135_s_atContig2135--4e-2At5g23660MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)O.I.H.G.S.X.
0.2732.10.94HV06P16u_atHV06P16u--4e+0At5g42797LCR28 (Low-molecular-weight cysteine-rich 28)O.I.H.G.S.X.
0.2732.10.95Contig1302_atContig1302--1e-5At1g20580small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.S.X.
0.2630.40.92Contig3932_atContig3932--2e-3At1g16230syntaxin-related family proteinO.I.H.G.S.X.
0.2528.90.93Contig26355_atContig26355--7e+0At2g11773unknown proteinO.I.H.G.S.X.
0.2528.90.94Contig24431_atContig24431--4e+0At1g11475NRPB10O.I.H.G.S.X.
0.2528.90.94Contig10357_atContig10357--2e+1At5g01849unknown proteinO.I.H.G.S.X.
0.2528.90.94Contig6964_s_atContig6964--9e-1At1g21890nodulin MtN21 family proteinO.I.H.G.S.X.
0.2528.90.95Contig15873_atContig15873--3e+0At3g43490zinc knuckle (CCHC-type) family proteinO.I.H.G.S.X.
0.2528.90.96Contig3645_atContig3645--7e-9At5g55850NOIO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.8GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM261068Albina f-17 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.494.8GSM261069Albina f-17 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.194.1GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.792.7GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.692.3GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.692.3GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.692.3GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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