Co-expression analysis

Gene ID Contig25251_at
Gene name
Homology with ArabidopsisSimilar to At4g15150: glycine-rich protein (HF=4e-1)
Module size 6 genes
NF 0.42
%ile 58.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4458.90.95Contig25251_atContig25251--4e-1At4g15150glycine-rich proteinO.I.H.G.S.X.
0.5066.90.97Contig10647_atContig10647--2e-46At2g20930-O.I.H.G.S.X.
0.4661.00.96Contig8141_atContig8141--2e+0At5g07950unknown proteinO.I.H.G.S.X.
0.4661.00.96Contig8766_atContig8766--8e-7At4g12130aminomethyltransferaseO.I.H.G.S.X.
0.3545.10.96Contig9632_atContig9632--1e-1At1g78370ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)O.I.H.G.S.X.
0.2630.40.96Contig13332_atContig13332--2e+0At1g68280thioesterase-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.8GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM261068Albina f-17 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.494.8GSM261069Albina f-17 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.194.1GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.792.7GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.692.3GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.692.3GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.692.3GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.14907.1.A1_at, orthologous to the query gene, Contig25251_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8996.8Zm.14907.1.A1_atAt4g15150hypothetical protein LOC100279699-2e+0At5g4770060S acidic ribosomal protein P1 (RPP1C)O.I.H.G.S.X.
0.5571.6Zm.14903.2.A1_atAt4g15150hypothetical protein LOC100276738-9e-1At3g06080unknown proteinO.I.H.G.S.X.
0.5571.6Zm.10422.1.S1_atAt4g15150hypothetical protein LOC100275624-4e+0At2g14846protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.5166.4Zm.40.1.S1_atAt4g15150--9e-5At3g43600AAO2 (ALDEHYDE OXIDASE 2)O.I.H.G.S.X.
0.4759.9Zm.10189.3.A1_atAt4g15150--3e-37At4g13940MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)O.I.H.G.S.X.
0.4251.3Zm.3436.1.A1_atAt4g15150hypothetical protein LOC100217002-1e-20At3g54190-O.I.H.G.S.X.
0.4149.7Zm.3866.1.S1_atAt4g15150D-amino acid oxidase-3e+0At1g51760IAR3 (IAA-ALANINE RESISTANT 3)O.I.H.G.S.X.
0.3641.3Zm.5048.7.A1_a_atAt4g15150hypothetical protein LOC100280264-3e-11At5g0709040S ribosomal protein S4 (RPS4B)O.I.H.G.S.X.
0.3641.3Zm.2653.1.A1_atAt4g15150--7e+0At4g37409unknown proteinO.I.H.G.S.X.
0.3437.2Zm.2652.1.A1_atAt4g15150--1e+1At5g18020auxin-responsive protein, putativeO.I.H.G.S.X.
0.3233.4Zm.16419.1.S1_atAt4g15150hypothetical protein LOC100276284-2e+1At5g08190NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12)O.I.H.G.S.X.
0.3131.6ZmAffx.644.1.S1_atAt4g15150--1e+1At5g10695unknown proteinO.I.H.G.S.X.
0.3029.8Zm.11620.1.A1_atAt4g15150--3e-1At2g41440unknown proteinO.I.H.G.S.X.
0.2828.1Zm.14051.1.S1_atAt4g15150hypothetical protein LOC100217091-5e-1At5g38650proteasome maturation factor UMP1 family proteinO.I.H.G.S.X.
0.2828.1Zm.6432.1.A1_atAt4g15150hypothetical protein LOC100191156-7e-10At5g64200ATSC35O.I.H.G.S.X.
0.1912.8Zm.7976.1.S1_atAt4g15150hypothetical protein LOC100217261-2e-46At5g37680ATARLA1A (ADP-ribosylation factor-like A1A)O.I.H.G.S.X.
0.136.8Zm.13815.1.S1_atAt4g15150Grx_C2.2 - glutaredoxin subgroup I-7e-3At5g63030glutaredoxin, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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