Co-expression analysis

Gene ID Contig25251_at
Gene name
Homology with ArabidopsisSimilar to At4g15150: glycine-rich protein (HF=4e-1)
Module size 6 genes
NF 0.42
%ile 58.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4458.90.95Contig25251_atContig25251--4e-1At4g15150glycine-rich proteinO.I.H.G.S.X.
0.5066.90.97Contig10647_atContig10647--2e-46At2g20930-O.I.H.G.S.X.
0.4661.00.96Contig8141_atContig8141--2e+0At5g07950unknown proteinO.I.H.G.S.X.
0.4661.00.96Contig8766_atContig8766--8e-7At4g12130aminomethyltransferaseO.I.H.G.S.X.
0.3545.10.96Contig9632_atContig9632--1e-1At1g78370ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)O.I.H.G.S.X.
0.2630.40.96Contig13332_atContig13332--2e+0At1g68280thioesterase-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.8GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM261068Albina f-17 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.494.8GSM261069Albina f-17 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.194.1GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.792.7GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.692.3GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.692.3GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.692.3GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.CL1523Contig1_at, orthologous to the query gene, Contig25251_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7388.9PsAffx.CL1523Contig1_atAt4g15150--4e+0At4g03270CYCD6O.I.H.G.S.X.
0.8693.0PsAffx.CL1316Contig1_s_atAt4g15150--3e-1At2g27580zinc finger (AN1-like) family proteinO.I.H.G.S.X.
0.8291.9PsAffx.CL2458Contig1_atAt4g15150--5e-6At1g4500026S proteasome regulatory complex subunit p42D, putativeO.I.H.G.S.X.
0.8091.5PsAffx.CL887Contig1_atAt4g15150--6e-3At2g46780RNA binding / nucleic acid binding / nucleotide bindingO.I.H.G.S.X.
0.7990.8PsAffx.CL57Contig1_atAt4g15150--6e-4At1g77930DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.7890.6PsAffx.CL643Contig1_atAt4g15150--5e-2At1g62333unknown proteinO.I.H.G.S.X.
0.7187.8PsAffx.psML008xI07f_s_atAt4g15150--6e-1At4g26930MYB97 (myb domain protein 97)O.I.H.G.S.X.
0.6886.4PsAffx.CL414Contig1_atAt4g15150--5e+0At3g15395unknown proteinO.I.H.G.S.X.
0.6886.4PsAffx.psHA009iD02r_s_atAt4g15150--3e+0At1g54095unknown proteinO.I.H.G.S.X.
0.6786.1PsAffx.CL57Contig2_s_atAt4g15150--3e-4At1g77930DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.6583.8PsAffx.C263000004_atAt4g15150--4e-1At2g23780zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6282.1PsAffx.CL87Contig2_s_atAt4g15150--1e+0At1g60010unknown proteinO.I.H.G.S.X.
0.6181.8PsAffx.CL785Contig1_atAt4g15150--1e+1At5g36920unknown proteinO.I.H.G.S.X.
0.6080.7PsAffx.CL188Contig1_atAt4g15150--6e+0At5g13100unknown proteinO.I.H.G.S.X.
0.5778.8PsAffx.CL176Contig1_s_atAt4g15150--4e+0At3g07430emb1990 (embryo defective 1990)O.I.H.G.S.X.
0.5576.3PsAffx.CL1Contig43_s_atAt4g15150--7e-1At1g65445transferase-relatedO.I.H.G.S.X.
0.5474.8PsAffx.CL569Contig1_atAt4g15150--1e-4At5g40580PBB2O.I.H.G.S.X.
0.5374.2PsAffx.CL74Contig1_atAt4g15150--4e-16At4g38740ROC1 (ROTAMASE CYP 1)O.I.H.G.S.X.
0.4766.6GmaAffx.76368.1.A1_s_atAt4g15150--1e+1At5g54067unknown proteinO.I.H.G.S.X.
0.4057.1PsAffx.CL199Contig1_atAt4g15150--2e+0At4g19740catalytic/ cation binding / chitinase/ hydrolase, hydrolyzing O-glycosyl compoundsO.I.H.G.S.X.
0.3853.3PsAffx.CL172Contig1_atAt4g15150--2e+0At4g02840small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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