Co-expression analysis

Gene ID Contig25251_at
Gene name
Homology with ArabidopsisSimilar to At4g15150: glycine-rich protein (HF=4e-1)
Module size 6 genes
NF 0.42
%ile 58.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4458.90.95Contig25251_atContig25251--4e-1At4g15150glycine-rich proteinO.I.H.G.S.X.
0.5066.90.97Contig10647_atContig10647--2e-46At2g20930-O.I.H.G.S.X.
0.4661.00.96Contig8141_atContig8141--2e+0At5g07950unknown proteinO.I.H.G.S.X.
0.4661.00.96Contig8766_atContig8766--8e-7At4g12130aminomethyltransferaseO.I.H.G.S.X.
0.3545.10.96Contig9632_atContig9632--1e-1At1g78370ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)O.I.H.G.S.X.
0.2630.40.96Contig13332_atContig13332--2e+0At1g68280thioesterase-relatedO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.8GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM261068Albina f-17 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.494.8GSM261069Albina f-17 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.194.1GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.792.7GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.692.3GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.692.3GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.692.3GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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