Co-expression analysis

Gene ID	Contig25213_at
Gene name
Homology with Arabidopsis	Similar to At5g39920: - (HF=2e+0)
Module size	6 genes
NF	0.16
%ile	19.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	0.93	Contig25213_at	Contig25213	-	-	2e+0	At5g39920	-	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	Contig11317_at	Contig11317	-	-	3e-9	At2g37860	LCD1 (LOWER CELL DENSITY 1)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.94	Contig4281_s_at	Contig4281	-	-	6e+0	At5g55710	-	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.94	Contig12596_at	Contig12596	-	-	5e-48	At4g35250	vestitone reductase-related	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.93	Contig16647_at	Contig16647	-	-	1e-6	At3g17300	-	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.94	HA02d18r_at	HA02d18r	-	-	1e+0	At5g13250	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.6	99.0	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.0	98.9	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
9.0	98.9	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
7.2	98.5	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.6	98.2	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.4	98.1	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.6	97.7	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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