Co-expression analysis

Gene ID	Contig2518_s_at
Gene name
Homology with Arabidopsis	Similar to At3g12500: ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) (HF=6e-1)
Module size	18 genes
NF	0.23
%ile	28.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	89.8	0.91	Contig2518_s_at	Contig2518	-	-	6e-1	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.93	Contig24290_at	Contig24290	-	-	3e-4	At3g50550	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.94	HVSMEm0005J13r2_at	HVSMEm0005J13r2	-	-	3e-4	At3g03800	SYP131 (SYNTAXIN OF PLANTS 131)	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	HV_CEb0017F03r2_s_at	HV_CEb0017F03r2	light-harvesting complex I	-	2e-11	At3g54890	LHCA1	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	HVSMEg0005F03r2_at	HVSMEg0005F03r2	-	-	9e-1	At5g56050	-	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.93	Contig9406_at	Contig9406	-	-	5e-32	At2g43945	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.93	Contig17737_at	Contig17737	-	-	2e+0	At3g51636	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	Contig25215_at	Contig25215	-	-	1e+1	Atcg00560	-	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig17645_at	Contig17645	-	-	2e+0	At3g56810	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.94	Contig11247_at	Contig11247	-	-	6e-2	At2g24440	selenium binding	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	Contig1138_at	Contig1138	-	-	2e-14	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.94	Contig7975_at	Contig7975	-	-	1e-1	At4g35600	CONNEXIN 32	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.93	Contig12406_at	Contig12406	-	-	2e-7	At1g76850	SEC5A (EXOCYST COMPLEX COMPONENT SEC5)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.93	Contig18688_at	Contig18688	-	-	5e+0	At5g09260	VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.93	Contig10917_at	Contig10917	-	-	5e-2	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.95	Contig12109_at	Contig12109	-	-	2e-16	At3g05760	nucleic acid binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.94	Contig21217_at	Contig21217	-	-	2e+0	At5g64810	WRKY51	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.95	Contig12544_s_at	Contig12544	-	-	2e+1	At5g03100	F-box family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.0	98.7	GSM261053	Bonus Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.9	98.3	GSM261056	Xantha b-12 Cotrol rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.8	97.8	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.5	95.1	GSM261052	Bonus Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.3	94.6	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.3	94.6	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.9	93.4	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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