Co-expression analysis

Gene ID	Contig25150_at
Gene name
Homology with Arabidopsis	Similar to At3g23400: plastid-lipid associated protein PAP / fibrillin family protein (HF=3e-1)
Module size	9 genes
NF	0.97
%ile	99.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	94.3	0.84	Contig25150_at	Contig25150	-	-	3e-1	At3g23400	plastid-lipid associated protein PAP / fibrillin family protein	O.I.	H.G.	S.X.	Please select
0.94	98.9	0.81	Contig26343_at	Contig26343	-	-	2e+0	At4g15250	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.94	98.9	0.84	Contig16839_at	Contig16839	-	-	1e+0	At1g20280	homeobox-leucine zipper protein-related	O.I.	H.G.	S.X.	Please select
0.94	98.9	0.87	Contig15932_at	Contig15932	-	-	2e+0	At1g50470	-	O.I.	H.G.	S.X.	Please select
0.94	98.9	0.88	Contig22666_at	Contig22666	-	-	6e-3	At3g22600	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.94	98.9	0.89	Contig1852_at	Contig1852	-	-	1e-2	At5g40150	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.94	98.9	0.89	Contig22433_at	Contig22433	-	-	5e+0	At5g50570	squamosa promoter-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.89	95.4	0.81	Contig21462_at	Contig21462	-	-	1e+1	At4g37682	-	O.I.	H.G.	S.X.	Please select
0.89	95.4	0.84	Contig21053_at	Contig21053	-	-	3e-2	At5g05230	ubiquitin-protein ligase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
28.5	99.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.6	99.2	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.1	99.1	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
9.8	99.1	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
9.2	99.0	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
9.1	98.9	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
8.4	98.8	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.8	98.6	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
7.5	98.6	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
7.2	98.5	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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