Co-expression analysis

Gene ID Contig25113_at
Gene name
Homology with ArabidopsisSimilar to At5g67520: adenylylsulfate kinase, putative (HF=5e+0)
Module size 40 genes
NF 0.32
%ile 41.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9699.40.87Contig25113_atContig25113--5e+0At5g67520adenylylsulfate kinase, putativeO.I.H.G.S.X.
0.5066.90.92Contig6811_s_atContig6811--5e-1At1g26470-O.I.H.G.S.X.
0.4661.00.91HK06I18r_atHK06I18r--1e+0At2g40475unknown proteinO.I.H.G.S.X.
0.4458.90.90Contig18671_atContig18671--4e+0At1g68400leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.4356.40.91Contig19190_atContig19190--2e-3At1g59790cullin-relatedO.I.H.G.S.X.
0.4255.20.92HX12D23r_atHX12D23r--3e-1At1g80640protein kinase family proteinO.I.H.G.S.X.
0.4053.10.93Contig10899_atContig10899--3e+0At3g63530BB (BIG BROTHER)O.I.H.G.S.X.
0.3950.50.90Contig1393_atContig1393--1e-42At3g46520ACT12 (ACTIN-12)O.I.H.G.S.X.
0.3849.50.92Contig17800_s_atContig17800--8e-2At5g25750unknown proteinO.I.H.G.S.X.
0.3747.90.91Contig9330_atContig9330--5e-2At5g41190-O.I.H.G.S.X.
0.3747.90.90Contig11456_atContig11456--6e-1At3g32090transcription factor-relatedO.I.H.G.S.X.
0.3747.90.90Contig6403_atContig6403--1e-2At1g14510AL7 (ALFIN-LIKE 7)O.I.H.G.S.X.
0.3747.90.91Contig4486_atContig4486--4e-1At5g16470zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.3647.10.91Contig6852_atContig6852--1e-3At1g28060small nuclear ribonucleoprotein family protein / snRNP family proteinO.I.H.G.S.X.
0.3545.10.90Contig15391_atContig15391--2e-9At2g42280basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.3545.10.90HV_CEb0023O21f_atHV_CEb0023O21f--9e-1At1g24440protein binding / zinc ion bindingO.I.H.G.S.X.
0.3545.10.89Contig10816_atContig10816--2e+0At3g09160RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.3545.10.93Contig15349_atContig15349--2e-1At5g38730pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.3443.60.91HD01G13w_atHD01G13w--9e-4At2g14045unknown proteinO.I.H.G.S.X.
0.3443.60.90HI04H23u_atHI04H23u--4e+0At5g15290integral membrane family proteinO.I.H.G.S.X.
0.3342.60.89Contig12790_atContig12790--1e+0At3g46300unknown proteinO.I.H.G.S.X.
0.3342.60.88Contig11684_atContig11684--2e-3At4g09270unknown proteinO.I.H.G.S.X.
0.3240.30.87Contig7684_atContig7684--1e-2At5g13180ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83)O.I.H.G.S.X.
0.3138.60.95Contig20160_atContig20160--8e-2At3g59740receptor lectin kinase 3 (lecRK3)O.I.H.G.S.X.
0.3037.00.93Contig13137_atContig13137--4e+0At4g25820XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)O.I.H.G.S.X.
0.2835.50.91Contig7556_s_atContig7556--5e-1At1g21326VQ motif-containing proteinO.I.H.G.S.X.
0.2835.50.92Contig6600_atContig6600--3e+0At1g02150pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.2835.50.91rbags25e03_atrbags25e03--3e+0At3g26070plastid-lipid associated protein PAP / fibrillin family proteinO.I.H.G.S.X.
0.2732.10.90Contig15380_atContig15380--2e-7At4g31770calcineurin-like phosphoesterase family proteinO.I.H.G.S.X.
0.2630.40.91HVSMEb0007P14r2_atHVSMEb0007P14r2--2e+0At5g62130Per1-like protein-relatedO.I.H.G.S.X.
0.2528.90.90Contig15074_atContig15074--4e+0At2g27160unknown proteinO.I.H.G.S.X.
0.2326.10.92Contig19698_atContig19698--6e-3At2g33030AtRLP25 (Receptor Like Protein 25)O.I.H.G.S.X.
0.2326.10.93Contig7205_atContig7205--2e-2At2g32550rcd1-like cell differentiation family proteinO.I.H.G.S.X.
0.1818.20.91Contig13792_s_atContig13792--4e+0At5g41614unknown proteinO.I.H.G.S.X.
0.1818.20.92Contig16313_atContig16313--1e-1At1g35170-O.I.H.G.S.X.
0.1818.20.93Contig5612_s_atContig5612--3e-3At3g47350short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.1615.30.93Contig20397_atContig20397--2e-3At1g53420serine/threonine protein kinase-relatedO.I.H.G.S.X.
0.1514.10.92Contig6644_atContig6644--8e-27At4g22310unknown proteinO.I.H.G.S.X.
0.1412.90.90Contig18588_atContig18588--6e-3At2g47960unknown proteinO.I.H.G.S.X.
0.1210.40.93HF24K16r_atHF24K16r--5e+0At5g38200hydrolaseO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.194.1GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM419979Awn_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
3.194.1GSM440970Control awn_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.591.9GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.591.9GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.290.3GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
2.290.3GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
2.290.3GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.189.7GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
2.189.7GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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