Co-expression analysis

Gene ID Contig2495_s_at
Gene name
Homology with ArabidopsisSimilar to At5g01650: macrophage migration inhibitory factor family protein / MIF family protein (HF=1e+1)
Module size 6 genes
NF 0.01
%ile 1.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.83Contig2495_s_atContig2495--1e+1At5g01650macrophage migration inhibitory factor family protein / MIF family proteinO.I.H.G.S.X.
0.1818.20.88HVSMEa0014K05r2_atHVSMEa0014K05r2--1e+0At2g10608unknown proteinO.I.H.G.S.X.
0.032.60.94Contig6765_atContig6765--2e-25At5g12860DiT1 (dicarboxylate transporter 1)O.I.H.G.S.X.
0.021.80.88Contig3327_atContig3327--7e-23At2g30110ATUBA1O.I.H.G.S.X.
0.011.10.91Contig11760_atContig11760--1e+0At5g11660unknown proteinO.I.H.G.S.X.
-0.20.91Contig9161_atContig9161--1e-31At4g35950ARAC6 (ARABIDOPSIS RAC-LIKE 6)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.999.4GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.798.9GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
7.598.6GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.598.2GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.498.1GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
6.198.0GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.097.9GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
6.097.9GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.897.8GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.897.8GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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