Co-expression analysis

Gene ID Contig2491_at
Gene name
Homology with ArabidopsisSimilar to At5g52770: heavy-metal-associated protein-related (HF=1e+1)
Module size 6 genes
NF 0.40
%ile 55.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6380.30.94Contig2491_atContig2491--1e+1At5g52770heavy-metal-associated protein-relatedO.I.H.G.S.X.
0.4458.90.94Contig10947_atContig10947--2e+0At5g27200ACP5 (acyl carrier protein 5)O.I.H.G.S.X.
0.4255.20.94Contig10823_atContig10823--2e+0At5g62627-O.I.H.G.S.X.
0.3647.10.94Contig9960_atContig9960aluminum activated citrate transporter-4e-2At3g08040FRD3 (FERRIC REDUCTASE DEFECTIVE 3)O.I.H.G.S.X.
0.3037.00.93Contig19854_s_atContig19854--2e+0At2g40085unknown proteinO.I.H.G.S.X.
0.2935.50.94Contig6698_atContig6698--9e-19At1g20330SMT2 (STEROL METHYLTRANSFERASE 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.597.6GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
4.296.3GSM419976Palea_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.296.3GSM440964Control palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.394.6GSM419977Palea_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
3.394.6GSM440965Control palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.294.3GSM440968Stressed palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.893.1GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
2.792.7GSM440961Stressed lemma_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.792.7GSM419974Lemma_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
2.792.7GSM440959Control lemma_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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