Co-expression analysis

Gene ID	Contig24884_at
Gene name
Homology with Arabidopsis	Similar to At5g10140: FLC (FLOWERING LOCUS C) (HF=1e-1)
Module size	21 genes
NF	0.96
%ile	99.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	0.91	Contig24884_at	Contig24884	-	-	1e-1	At5g10140	FLC (FLOWERING LOCUS C)	O.I.	H.G.	S.X.	Please select
0.98	100.0	0.93	Contig11232_at	Contig11232	-	-	1e-4	At3g26790	FUS3 (FUSCA 3)	O.I.	H.G.	S.X.	Please select
0.98	100.0	0.93	EBma08_SQ002_F06_at	EBma08_SQ002_F06	-	-	9e-1	At3g43170	unknown protein	O.I.	H.G.	S.X.	Please select
0.98	100.0	0.95	HD04G09u_at	HD04G09u	-	-	1e+0	At2g46690	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.95	99.2	0.91	HB04I10r_at	HB04I10r	-	-	5e+0	At5g56230	PRA1.G2 (PRENYLATED RAB ACCEPTOR 1.G2)	O.I.	H.G.	S.X.	Please select
0.95	99.2	0.92	HF14A04r_at	HF14A04r	-	-	2e+0	At5g22240	OFP10	O.I.	H.G.	S.X.	Please select
0.95	99.2	0.92	HD08L09r_at	HD08L09r	-	-	4e+0	At2g40085	unknown protein	O.I.	H.G.	S.X.	Please select
0.95	99.2	0.92	HM11M18r_at	HM11M18r	-	-	9e-1	At2g27160	unknown protein	O.I.	H.G.	S.X.	Please select
0.95	99.2	0.92	HB14P07r_at	HB14P07r	-	-	6e+0	At5g17810	WOX12 (WUSCHEL related homeobox 12)	O.I.	H.G.	S.X.	Please select
0.95	99.2	0.92	HB04I10r_x_at	HB04I10r	-	-	5e+0	At5g56230	PRA1.G2 (PRENYLATED RAB ACCEPTOR 1.G2)	O.I.	H.G.	S.X.	Please select
0.95	99.2	0.92	Contig12012_at	Contig12012	-	-	1e+0	At1g31040	unknown protein	O.I.	H.G.	S.X.	Please select
0.95	99.2	0.94	HF09N12r_at	HF09N12r	-	-	1e-1	At5g39330	unknown protein	O.I.	H.G.	S.X.	Please select
0.95	99.2	0.94	EBma03_SQ002_D19_at	EBma03_SQ002_D19	-	-	1e+0	At5g57391	unknown protein	O.I.	H.G.	S.X.	Please select
0.95	99.2	0.95	Contig25644_at	Contig25644	-	-	4e+0	At4g19003	VPS25	O.I.	H.G.	S.X.	Please select
0.93	98.7	0.89	HF13L09r_at	HF13L09r	-	-	3e+0	At4g10430	-	O.I.	H.G.	S.X.	Please select
0.93	98.7	0.92	HB25F09r_x_at	HB25F09r	-	-	6e+0	At4g36515	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.91	HB11D23r_x_at	HB11D23r	-	-	2e+0	At2g14110	-	O.I.	H.G.	S.X.	Please select
0.88	95.2	0.93	Contig1675_s_at	Contig1675	-	-	7e+0	Atmg01090	-	O.I.	H.G.	S.X.	Please select
0.87	95.0	0.95	HM05O11r_at	HM05O11r	-	-	5e-1	At2g17540	unknown protein	O.I.	H.G.	S.X.	Please select
0.86	94.8	0.92	Contig21830_at	Contig21830	-	-	1e+0	At3g17660	AGD15 (ARF-GAP domain 15)	O.I.	H.G.	S.X.	Please select
0.84	94.3	0.91	HZ01M13u_at	HZ01M13u	-	-	4e+0	At3g25730	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.7	98.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.3	98.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.5	97.6	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.8	97.0	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
3.7	95.5	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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