Co-expression analysis

Gene ID Contig24881_s_at
Gene name
Homology with ArabidopsisSimilar to At1g75340: zinc finger (CCCH-type) family protein (HF=5e-2)
Module size 16 genes
NF 0.41
%ile 57.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8192.80.96Contig24881_s_atContig24881--5e-2At1g75340zinc finger (CCCH-type) family proteinO.I.H.G.S.X.
0.5369.70.96Contig5857_s_atContig5857--2e-1At1g02965unknown proteinO.I.H.G.S.X.
0.5066.90.96Contig14398_s_atContig14398--4e-3At5g43780APS4O.I.H.G.S.X.
0.4559.30.96Contig5311_atContig5311O-methyltransferase-7e-1At1g62900O-methyltransferase, putativeO.I.H.G.S.X.
0.4458.90.96Contig7044_atContig7044--4e-3At5g42090-O.I.H.G.S.X.
0.4153.90.96Contig7815_s_atContig7815--2e-5At5g48930HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE)O.I.H.G.S.X.
0.4153.90.96Contig10426_atContig10426--3e-9At3g19630radical SAM domain-containing proteinO.I.H.G.S.X.
0.3950.50.96Contig10840_atContig10840--4e-6At5g50780ATP bindingO.I.H.G.S.X.
0.3950.50.96Contig14607_atContig14607--2e+0At4g37440unknown proteinO.I.H.G.S.X.
0.3747.90.96Contig9932_atContig9932--6e-7At5g03530RABC2A (RAB GTPASE HOMOLOG C2A)O.I.H.G.S.X.
0.3647.10.96Contig8695_atContig8695--3e+0At3g28140calmodulin-binding proteinO.I.H.G.S.X.
0.3647.10.96Contig12827_atContig12827--8e-1At2g27470NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11)O.I.H.G.S.X.
0.3342.60.96Contig19484_atContig19484--3e-2At1g47270AtTLP6 (TUBBY LIKE PROTEIN 6)O.I.H.G.S.X.
0.3240.30.97Contig12375_atContig12375--1e-4At3g28940avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putativeO.I.H.G.S.X.
0.3037.00.96Contig6082_atContig6082--2e+0At3g52760integral membrane Yip1 family proteinO.I.H.G.S.X.
0.2732.10.96Contig7152_atContig7152--2e-34At3g58600-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.398.8GSM71156Morex stress and unstress replicate 3GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
4.796.9GSM71140OWB-D stress replicate 2GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
3.895.7GSM130802salinity stress, biological rep2GSE5605Expression data from barley under salinity stress and JA treatmentLink to GEO
3.895.7GSM130800control, biological rep2GSE5605Expression data from barley under salinity stress and JA treatmentLink to GEO
3.595.1GSM71141OWB-D stress replicate 3GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
3.494.8GSM71154Morex stress and unstress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
3.494.8GSM130799control, biological rep1GSE5605Expression data from barley under salinity stress and JA treatmentLink to GEO
3.194.1GSM146377Maythorpe shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.194.1GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM146375Maythorpe shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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