Co-expression analysis

Gene ID Contig24870_at
Gene name
Homology with ArabidopsisSimilar to At4g29980: unknown protein (HF=1e+0)
Module size 12 genes
NF 0.36
%ile 49.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9699.40.89Contig24870_atContig24870--1e+0At4g29980unknown proteinO.I.H.G.S.X.
0.5066.90.90HVSMEm0003E10r2_x_atHVSMEm0003E10r2--1e+0At1g61090unknown proteinO.I.H.G.S.X.
0.4255.20.94Contig1242_atContig1242aquaporin-1e-30At1g01620PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)O.I.H.G.S.X.
0.3849.50.96rbaal1l23_s_atrbaal1l23--1e+0At3g13280-O.I.H.G.S.X.
0.3138.60.94Contig3849_atContig3849--3e-67At1g7921020S proteasome alpha subunit B, putativeO.I.H.G.S.X.
0.3037.00.93Contig4371_atContig4371--2e-9At1g63290ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putativeO.I.H.G.S.X.
0.3037.00.93Contig7298_atContig7298--6e-13At4g27700rhodanese-like domain-containing proteinO.I.H.G.S.X.
0.2732.10.92Contig9547_atContig9547--8e-1At2g16510vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)O.I.H.G.S.X.
0.2732.10.96Contig7408_s_atContig7408--1e+0At3g32260-O.I.H.G.S.X.
0.2224.20.92Contig10136_s_atContig10136--7e-2At5g01350unknown proteinO.I.H.G.S.X.
0.2224.20.96Contig8932_s_atContig8932--4e+0At5g37240unknown proteinO.I.H.G.S.X.
0.2122.60.92Contig3848_s_atContig3848--7e-23At4g34350HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.598.2GSM261038Dicktoo-subzero-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
6.398.1GSM261036Dicktoo-subzero-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
5.897.8GSM261053Bonus Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.697.7GSM261037Dicktoo-subzero-rep2GSE10329Low temperature stress in cv. DicktooLink to GEO
4.796.9GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.995.8GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.494.8GSM261054Bonus Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.394.6GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.194.1GSM261034Dicktoo-chilling-rep2GSE10329Low temperature stress in cv. DicktooLink to GEO
2.390.9GSM261033Dicktoo-chilling-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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