Co-expression analysis

Gene ID	Contig2481_s_at
Gene name
Homology with Arabidopsis	Similar to At1g43160: RAP2.6 (related to AP2 6) (HF=8e-6)
Module size	18 genes
NF	0.12
%ile	14.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	89.8	0.83	Contig2481_s_at	Contig2481	-	-	8e-6	At1g43160	RAP2.6 (related to AP2 6)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.92	rbaal20n01_s_at	rbaal20n01	-	-	4e-1	At3g46160	protein kinase-related	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.89	Contig20072_at	Contig20072	-	-	6e+0	At4g26288	-	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.89	Contig656_at	Contig656	-	-	3e-1	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.90	Contig13864_at	Contig13864	-	-	9e-2	At3g60590	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.91	Contig4734_s_at	Contig4734	-	-	1e-25	At1g10950	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.90	Contig8038_s_at	Contig8038	-	-	7e-82	At3g24190	ABC1 family protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.86	Contig17047_at	Contig17047	-	-	2e+0	At3g13440	methyltransferase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.92	Contig5497_s_at	Contig5497	-	-	1e-3	At3g44190	pyridine nucleotide-disulphide oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.93	Contig4535_at	Contig4535	-	-	2e-42	At4g31490	coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.92	Contig24_at	Contig24	-	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.91	Contig10620_at	Contig10620	-	-	2e-6	At5g49020	PRMT4A (PROTEIN ARGININE METHYLTRANSFERASE 4A)	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.90	Contig25984_at	Contig25984	-	-	9e-1	At4g24380	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.93	Contig13404_at	Contig13404	-	-	2e+0	At1g76750	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.92	Contig10826_at	Contig10826	-	-	3e-2	At1g59800	cullin-related	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.91	Contig7918_at	Contig7918	-	-	4e-1	At4g00950	MEE47 (maternal effect embryo arrest 47)	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.90	Contig10491_at	Contig10491	-	-	2e+0	Atmg01100	-	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.91	Contig9039_at	Contig9039	-	-	1e-2	At1g49730	protein kinase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.2	99.4	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
10.1	99.1	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
4.8	97.0	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
2.8	93.1	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
2.6	92.3	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
2.5	91.9	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.2	90.3	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.0	89.0	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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