Co-expression analysis

Gene ID	Contig2475_at
Gene name
Homology with Arabidopsis	Similar to At4g11870: unknown protein (HF=7e-2)
Module size	7 genes
NF	0.40
%ile	54.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	0.96	Contig2475_at	Contig2475	-	-	7e-2	At4g11870	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.97	Contig12375_at	Contig12375	-	-	1e-4	At3g28940	avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.96	Contig6082_at	Contig6082	-	-	2e+0	At3g52760	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	Contig10037_at	Contig10037	-	-	9e-1	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	Contig3806_s_at	Contig3806	-	-	1e-3	At2g43710	SSI2	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig23066_at	Contig23066	-	-	1e+0	At5g54890	RNA binding	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	Contig11259_at	Contig11259	-	-	8e-4	At5g17230	phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	97.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9	95.8	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
3.7	95.5	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
3.5	95.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.4	94.8	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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