Co-expression analysis

Gene ID	Contig2474_at
Gene name
Homology with Arabidopsis	Similar to At1g80240: unknown protein (HF=2e-1)
Module size	7 genes
NF	0.09
%ile	11.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	78.7	0.79	Contig2474_at	Contig2474	-	-	2e-1	At1g80240	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.83	Contig12021_at	Contig12021	-	-	6e+0	At5g18970	AWPM-19-like membrane family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.87	Contig12276_at	Contig12276	-	-	4e-2	At4g32960	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.83	HS17I17u_s_at	HS17I17u	-	-	1e+1	At5g23100	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.85	S0000200012H06F1_at	S0000200012H06F1	-	-	4e-2	At4g15620	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.84	HVSMEb0012H18r2_at	HVSMEb0012H18r2	-	-	7e-2	At5g27541	-	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.83	Contig8273_at	Contig8273	-	-	2e+0	At5g03170	FLA11	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.5	99.4	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.3	99.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.1	98.9	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.4	98.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.5	98.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.0	98.4	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage