Co-expression analysis

Gene ID	Contig24673_at
Gene name
Homology with Arabidopsis	Similar to At1g49400: emb1129 (embryo defective 1129) (HF=4e-2)
Module size	17 genes
NF	0.58
%ile	80.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	0.67	Contig24673_at	Contig24673	-	-	4e-2	At1g49400	emb1129 (embryo defective 1129)	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.78	EBro01_SQ005_J04_at	EBro01_SQ005_J04	-	-	4e+0	At3g22235	-	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.84	Contig1561_at	Contig1561	-	-	2e-5	At2g43460	60S ribosomal protein L38 (RPL38A)	O.I.	H.G.	S.X.	Please select
0.69	85.5	0.79	HW05D06V_at	HW05D06V	-	-	1e+0	At3g55420	unknown protein	O.I.	H.G.	S.X.	Please select
0.68	85.1	0.76	Contig13497_s_at	Contig13497	-	-	1e-1	At5g22600	-	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.76	Contig13498_at	Contig13498	-	-	2e-3	At1g65790	ARK1 (A. THALIANA RECEPTOR KINASE 1)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.83	HR01G01r_at	HR01G01r	-	-	4e+0	At3g22560	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.73	EBro03_SQ006_M03_at	EBro03_SQ006_M03	-	-	8e-1	At3g10210	-	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.79	Contig2560_at	Contig2560	-	-	4e+0	At3g51880	HMGB1 (HIGH MOBILITY GROUP B 1)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.76	HW09P12u_at	HW09P12u	-	-	4e+0	At4g04330	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.76	Contig23103_at	Contig23103	-	-	9e-2	At1g02065	SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.75	Contig2269_at	Contig2269	-	-	1e-7	At5g02870	60S ribosomal protein L4/L1 (RPL4D)	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.81	EBro08_SQ011_N18_at	EBro08_SQ011_N18	-	-	4e+0	At3g46613	RTFL4 (ROTUNDIFOLIA LIKE 4)	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.78	EBro04_SQ004_M12a_at	EBro04_SQ004_M12a	-	-	1e+0	At1g02470	-	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.84	HW03K15u_at	HW03K15u	-	-	1e-2	At3g45920	receptor protein kinase-related	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.86	Contig17095_at	Contig17095	-	-	4e-5	At3g60600	VAP (VESICLE ASSOCIATED PROTEIN)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.78	Contig8308_at	Contig8308	-	-	3e-1	At1g66210	subtilase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.9	99.6	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
5.4	97.5	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
5.0	97.2	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.8	97.0	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
4.0	96.0	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.3	94.6	GSM71142	OWB-R stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.3	94.6	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.2	94.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM71140	OWB-D stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage