CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig24654_at

Gene name
Homology with Arabidopsis Similar to At1g28460: AGL59 (AGAMOUS-LIKE 59) (HF=1e-1)

Module size 6 genes

NF 0.06

%ile 7.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.82 Contig24654_at Contig24654 - - 1e-1 At1g28460 AGL59 (AGAMOUS-LIKE 59) O.I. H.G. S.X.
0.14 12.9 0.93 Contig15627_s_at Contig15627 - - 4e+0 At5g15802 unknown protein O.I. H.G. S.X.
0.11 9.4 0.93 HU08C09u_at HU08C09u - - 8e-1 At3g30260 AGL79 (AGAMOUS-LIKE 79) O.I. H.G. S.X.
0.06 4.8 0.93 HVSMEb0009N20r2_at HVSMEb0009N20r2 - - 6e+0 At3g50960 PLP3a (Phosducin-like protein 3 homolog) O.I. H.G. S.X.
0.04 3.4 0.93 Contig10681_at Contig10681 - - 1e-1 At3g19480 D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative O.I. H.G. S.X.
0.02 1.8 0.93 Contig8230_at Contig8230 - - 3e-24 At4g04860 DER2.2 (DERLIN-2.2) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.87	S0001000057I09F1_at	S0001000057I09F1	-	-	2e-1	At1g53635	unknown protein	O.I.	H.G.	S.X.
0.44	58.9	0.95	rbaal28o12_x_at	rbaal28o12	-	-	1e+0	At2g13570	NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7)	O.I.	H.G.	S.X.
0.40	53.1	0.90	HT09J11u_at	HT09J11u	-	-	7e-1	At1g43600	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.
0.29	35.5	0.91	HVSMEb0014B07r2_s_at	HVSMEb0014B07r2	-	-	3e+0	At5g61100	-	O.I.	H.G.	S.X.
0.23	26.1	0.94	HVSMEm0007K02r2_at	HVSMEm0007K02r2	-	-	3e-1	At5g26770	unknown protein	O.I.	H.G.	S.X.
0.21	22.6	0.95	Contig23379_at	Contig23379	-	-	9e-2	At2g02020	proton-dependent oligopeptide transport (POT) family protein	O.I.	H.G.	S.X.
0.19	19.6	0.88	HVSMEa0017I02r2_at	HVSMEa0017I02r2	-	-	3e-1	At1g73650	oxidoreductase, acting on the CH-CH group of donors	O.I.	H.G.	S.X.
0.18	18.2	0.91	EBro08_SQ005_E01_at	EBro08_SQ005_E01	-	-	1e+0	At1g14900	HMGA (HIGH MOBILITY GROUP A)	O.I.	H.G.	S.X.
0.18	18.2	0.93	Contig10691_s_at	Contig10691	-	-	8e-1	At1g67330	unknown protein	O.I.	H.G.	S.X.
0.16	15.3	0.91	HU14G03u_at	HU14G03u	-	-	9e-1	At4g01535	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.0 99.2 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.1 98.7 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.7 98.3 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.1 98.0 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.9 97.9 GSM282025 Control_dryseed_Morex_rep1 GSE11200 Expression data from malting barley seeds
5.9 97.9 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds
5.5 97.6 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.1 97.3 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.9 97.1 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.5 96.7 GSM146368 Maythorpe Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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