Co-expression analysis

Gene ID Contig24654_at
Gene name
Homology with ArabidopsisSimilar to At1g28460: AGL59 (AGAMOUS-LIKE 59) (HF=1e-1)
Module size 6 genes
NF 0.06
%ile 7.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.82Contig24654_atContig24654--1e-1At1g28460AGL59 (AGAMOUS-LIKE 59)O.I.H.G.S.X.
0.1412.90.93Contig15627_s_atContig15627--4e+0At5g15802unknown proteinO.I.H.G.S.X.
0.119.40.93HU08C09u_atHU08C09u--8e-1At3g30260AGL79 (AGAMOUS-LIKE 79)O.I.H.G.S.X.
0.064.80.93HVSMEb0009N20r2_atHVSMEb0009N20r2--6e+0At3g50960PLP3a (Phosducin-like protein 3 homolog)O.I.H.G.S.X.
0.043.40.93Contig10681_atContig10681--1e-1At3g19480D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putativeO.I.H.G.S.X.
0.021.80.93Contig8230_atContig8230--3e-24At4g04860DER2.2 (DERLIN-2.2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.099.2GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.198.7GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.798.3GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.198.0GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.997.9GSM282025Control_dryseed_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.997.9GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
5.597.6GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.997.1GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1615569_at, orthologous to the query gene, Contig24654_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5679.41615569_atAt1g28460hypothetical protein LOC100258690-1e+0At5g35520MIS12 (MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE)O.I.H.G.S.X.
0.3345.71612901_s_atAt1g28460hypothetical protein LOC100261431-2e+0At5g58787zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2530.51608158_atAt1g28460hypothetical protein LOC100264927-1e-22At4g2709060S ribosomal protein L14 (RPL14B)O.I.H.G.S.X.
0.2225.61612980_atAt1g28460--4e+0At4g12090cornichon family proteinO.I.H.G.S.X.
0.1414.41620488_atAt1g28460hypothetical protein LOC100264952-6e+0At1g48070-O.I.H.G.S.X.
0.1212.11620799_atAt1g28460hypothetical protein LOC100241396-2e-2At4g35987unknown proteinO.I.H.G.S.X.
0.1212.11621793_atAt1g28460--4e-34At1g54100ALDH7B4 (Aldehyde Dehydrogenase 7B4)O.I.H.G.S.X.
0.099.41614761_atAt1g28460hypothetical protein LOC100266857-4e+0At1g69920ATGSTU12 (GLUTATHIONE S-TRANSFERASE TAU 12)O.I.H.G.S.X.
0.099.41618321_atAt1g28460hypothetical protein LOC100260152-1e-18At1g71350eukaryotic translation initiation factor SUI1 family proteinO.I.H.G.S.X.
0.088.51615676_a_atAt1g28460hypothetical protein LOC100246113-2e+0At2g16595-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage