Co-expression analysis

Gene ID Contig24654_at
Gene name
Homology with ArabidopsisSimilar to At1g28460: AGL59 (AGAMOUS-LIKE 59) (HF=1e-1)
Module size 6 genes
NF 0.06
%ile 7.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.82Contig24654_atContig24654--1e-1At1g28460AGL59 (AGAMOUS-LIKE 59)O.I.H.G.S.X.
0.1412.90.93Contig15627_s_atContig15627--4e+0At5g15802unknown proteinO.I.H.G.S.X.
0.119.40.93HU08C09u_atHU08C09u--8e-1At3g30260AGL79 (AGAMOUS-LIKE 79)O.I.H.G.S.X.
0.064.80.93HVSMEb0009N20r2_atHVSMEb0009N20r2--6e+0At3g50960PLP3a (Phosducin-like protein 3 homolog)O.I.H.G.S.X.
0.043.40.93Contig10681_atContig10681--1e-1At3g19480D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putativeO.I.H.G.S.X.
0.021.80.93Contig8230_atContig8230--3e-24At4g04860DER2.2 (DERLIN-2.2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.099.2GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.198.7GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.798.3GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.198.0GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.997.9GSM282025Control_dryseed_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.997.9GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
5.597.6GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.997.1GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.12160.1.A1_at, orthologous to the query gene, Contig24654_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9599.1TaAffx.12160.1.A1_atAt1g28460--8e-1At5g04470SIM (SIAMESE)O.I.H.G.S.X.
0.4260.9Ta.7210.1.S1_a_atAt1g28460--5e-2At3g61350SKIP4 (SKP1 INTERACTING PARTNER 4)O.I.H.G.S.X.
0.2532.1TaAffx.128554.1.S1_s_atAt1g28460--1e-18At4g35800NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)O.I.H.G.S.X.
0.2430.3Ta.10102.1.A1_atAt1g28460--5e+0At3g19000oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.2125.5Ta.30415.1.S1_atAt1g28460--1e+0At5g24860FPF1 (FLOWERING PROMOTING FACTOR 1)O.I.H.G.S.X.
0.1922.4Ta.2920.1.A1_a_atAt1g28460--3e+0At2g25605unknown proteinO.I.H.G.S.X.
0.1922.4Ta.9551.1.S1_atAt1g28460--2e-8At5g55910D6PK (D6 PROTEIN KINASE)O.I.H.G.S.X.
0.1922.4Ta.10139.1.S1_atAt1g28460ethylene receptor-like protein-2e-41At1g66340ETR1 (ETHYLENE RESPONSE 1)O.I.H.G.S.X.
0.1821.0Ta.25558.1.S1_atAt1g28460--2e+0At5g59350unknown proteinO.I.H.G.S.X.
0.1719.8Ta.6610.1.A1_atAt1g28460--2e+0At5g15960KIN1O.I.H.G.S.X.
0.1719.8Ta.1847.1.S1_atAt1g28460--2e-13At5g17900-O.I.H.G.S.X.
0.1719.8Ta.25255.1.S1_s_atAt1g28460--2e+0At1g80130bindingO.I.H.G.S.X.
0.1618.2Ta.28833.1.S1_atAt1g28460--8e-1At2g30700unknown proteinO.I.H.G.S.X.
0.1517.1Ta.26903.1.S1_a_atAt1g28460--4e-24At2g25570bindingO.I.H.G.S.X.
0.1415.8TaAffx.128418.33.S1_atAt1g28460--1e+0At2g31180MYB14 (MYB DOMAIN PROTEIN 14)O.I.H.G.S.X.
0.1415.8Ta.10139.1.S1_s_atAt1g28460--2e-41At1g66340ETR1 (ETHYLENE RESPONSE 1)O.I.H.G.S.X.
0.1314.6Ta.4428.1.S1_atAt1g28460--3e-38At1g15750TPL (TOPLESS)O.I.H.G.S.X.
0.1314.6TaAffx.75110.1.S1_atAt1g28460--4e+0At3g10915reticulon family proteinO.I.H.G.S.X.
0.1314.6Ta.7048.1.S1_atAt1g28460--3e+0At1g68630unknown proteinO.I.H.G.S.X.
0.1112.4Ta.8151.1.S1_atAt1g28460--3e+0Atmg00890-O.I.H.G.S.X.
0.1011.3Ta.5537.1.S1_atAt1g28460--2e-43At5g20570RBX1 (RING-BOX 1)O.I.H.G.S.X.
0.078.6TaAffx.128418.4.S1_s_atAt1g28460--8e+0At5g38420ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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