Co-expression analysis

Gene ID Contig24654_at
Gene name
Homology with ArabidopsisSimilar to At1g28460: AGL59 (AGAMOUS-LIKE 59) (HF=1e-1)
Module size 6 genes
NF 0.06
%ile 7.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.82Contig24654_atContig24654--1e-1At1g28460AGL59 (AGAMOUS-LIKE 59)O.I.H.G.S.X.
0.1412.90.93Contig15627_s_atContig15627--4e+0At5g15802unknown proteinO.I.H.G.S.X.
0.119.40.93HU08C09u_atHU08C09u--8e-1At3g30260AGL79 (AGAMOUS-LIKE 79)O.I.H.G.S.X.
0.064.80.93HVSMEb0009N20r2_atHVSMEb0009N20r2--6e+0At3g50960PLP3a (Phosducin-like protein 3 homolog)O.I.H.G.S.X.
0.043.40.93Contig10681_atContig10681--1e-1At3g19480D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putativeO.I.H.G.S.X.
0.021.80.93Contig8230_atContig8230--3e-24At4g04860DER2.2 (DERLIN-2.2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.099.2GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.198.7GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.798.3GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.198.0GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.997.9GSM282025Control_dryseed_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.997.9GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
5.597.6GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.997.1GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os06g0724500, orthologous to the query gene, Contig24654_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7793.1Os06g0724500At1g28460-WD40-like domain containing protein9e-7At4g35140transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.5978.0Os10g0578000At1g28460-contains InterPro domain(s): IPR002014, IPR0089427e-10At5g16880VHS domain-containing protein / GAT domain-containing proteinO.I.H.G.S.X.
0.5777.0Os09g0550000At1g28460-Bromodomain containing protein6e-18At1g20670DNA-binding bromodomain-containing proteinO.I.H.G.S.X.
0.3745.0Os08g0559900At1g28460-PAP/25A core domain containing protein9e-2At3g45750unknown proteinO.I.H.G.S.X.
0.127.2Os02g0505400At1g28460-Exo70 exocyst complex subunit family protein4e-2At1g29790-O.I.H.G.S.X.
0.127.2Os06g0694000At1g28460-Cyclin-like F-box domain containing protein7e-24At5g57360ZTL (ZEITLUPE)O.I.H.G.S.X.
0.127.2Os08g0375900At1g28460-NUDIX hydrolase domain containing protein6e-1At4g34320unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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