Co-expression analysis

Gene ID Contig24654_at
Gene name
Homology with ArabidopsisSimilar to At1g28460: AGL59 (AGAMOUS-LIKE 59) (HF=1e-1)
Module size 6 genes
NF 0.06
%ile 7.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.82Contig24654_atContig24654--1e-1At1g28460AGL59 (AGAMOUS-LIKE 59)O.I.H.G.S.X.
0.1412.90.93Contig15627_s_atContig15627--4e+0At5g15802unknown proteinO.I.H.G.S.X.
0.119.40.93HU08C09u_atHU08C09u--8e-1At3g30260AGL79 (AGAMOUS-LIKE 79)O.I.H.G.S.X.
0.064.80.93HVSMEb0009N20r2_atHVSMEb0009N20r2--6e+0At3g50960PLP3a (Phosducin-like protein 3 homolog)O.I.H.G.S.X.
0.043.40.93Contig10681_atContig10681--1e-1At3g19480D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putativeO.I.H.G.S.X.
0.021.80.93Contig8230_atContig8230--3e-24At4g04860DER2.2 (DERLIN-2.2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.099.2GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.198.7GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.798.3GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.198.0GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.997.9GSM282025Control_dryseed_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.997.9GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
5.597.6GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.997.1GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g28460, orthologous to the query gene, Contig24654_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.2830.3At1g28460839745AGL59 (AGAMOUS-LIKE 59)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOO.I.H.G.S.X.
0.5065.3At2g16340816130unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMFOPAVO.I.H.G.S.X.
0.5065.3At3g50250824187unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2014.4At1g53600841795pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFVAO.I.H.G.S.X.
0.040.9At1g04050839320SUVR1 (ARABIDOPSIS HOMOLOG OF SU(VAR)3-9 1)Encodes SUVR1, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain. Localized to the nucleolus, maybe involved in regulation of rRNA expression.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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