Co-expression analysis

Gene ID	Contig24614_at
Gene name
Homology with Arabidopsis	Similar to At1g47970: unknown protein (HF=6e-2)
Module size	31 genes
NF	0.33
%ile	44.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	95.7	0.93	Contig24614_at	Contig24614	-	-	6e-2	At1g47970	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.94	Contig235_at	Contig235	-	-	7e-35	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	Contig17539_at	Contig17539	-	-	5e-41	At3g02460	plant adhesion molecule, putative	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.93	Contig12308_at	Contig12308	-	-	1e-5	At3g23530	cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig6884_s_at	Contig6884	-	-	9e-5	At4g34100	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.93	Contig11632_at	Contig11632	-	-	4e-2	At2g37080	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.95	Contig16518_at	Contig16518	-	-	7e+0	Atmg00070	-	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.94	HVSMEg0010L05r2_at	HVSMEg0010L05r2	-	-	2e+0	At2g45610	hydrolase	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	Contig16255_s_at	Contig16255	-	-	2e-11	At3g46590	TRFL1 (TRF-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.94	Contig10225_s_at	Contig10225	-	-	4e+0	At5g09490	40S ribosomal protein S15 (RPS15B)	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.95	Contig10032_at	Contig10032	-	-	7e-3	At5g09850	transcription elongation factor-related	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.94	EBro03_SQ008_H22_at	EBro03_SQ008_H22	-	-	4e-6	At4g32605	-	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.93	Contig5857_at	Contig5857	-	-	2e-1	At1g02965	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.93	Contig1493_at	Contig1493	-	-	8e-12	At4g25740	40S ribosomal protein S10 (RPS10A)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.95	Contig6509_at	Contig6509	-	-	4e-21	At5g12040	carbon-nitrogen hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.94	Contig17612_at	Contig17612	-	-	1e+0	At1g01910	anion-transporting ATPase, putative	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig14530_at	Contig14530	-	-	2e+0	At1g10820	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.94	Contig1701_s_at	Contig1701	-	-	9e-5	At1g20440	COR47 (COLD-REGULATED 47)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig8943_at	Contig8943	-	-	1e-6	At1g75990	26S proteasome regulatory subunit S3, putative (RPN3)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.94	Contig11784_at	Contig11784	-	-	3e+0	At4g31441	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig4715_at	Contig4715	-	-	1e+0	At4g10810	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.94	Contig1517_at	Contig1517	-	-	2e-2	At5g39120	germin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.94	Contig9332_at	Contig9332	-	-	6e+0	At3g01470	ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1)	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.96	Contig17063_at	Contig17063	-	-	5e-16	At1g65650	UCH2	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig10520_s_at	Contig10520	-	-	3e-1	At4g39990	RABA4B (RAB GTPASE HOMOLOG A4B)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	Contig6546_at	Contig6546	-	-	8e+0	At5g02780	In2-1 protein, putative	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig6545_at	Contig6545	-	-	1e-2	At1g14250	nucleoside phosphatase family protein / GDA1/CD39 family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	Contig7954_at	Contig7954	-	-	1e-1	At4g36900	RAP2.10 (related to AP2 10)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig17683_at	Contig17683	-	-	2e+0	At3g11730	ATFP8	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	Contig6264_at	Contig6264	-	-	2e-5	At3g11330	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig23996_at	Contig23996	-	-	6e-9	At4g39970	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.8	98.9	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.5	91.9	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.4	91.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.3	90.9	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.3	90.9	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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