Co-expression analysis

Gene ID	Contig24576_at
Gene name
Homology with Arabidopsis	Similar to At5g28295: unknown protein (HF=1e+0)
Module size	10 genes
NF	0.45
%ile	62.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	91.2	0.96	Contig24576_at	Contig24576	-	-	1e+0	At5g28295	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.96	Contig665_s_at	Contig665	-	-	2e-20	At1g07820	histone H4	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.96	Contig4218_at	Contig4218	-	-	1e-19	At1g26270	phosphatidylinositol 3- and 4-kinase family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.97	HVSMEm0005B11r2_x_at	HVSMEm0005B11r2	-	-	4e+0	At2g36020	HVA22J (HVA22-LIKE PROTEIN J)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig6283_at	Contig6283	-	-	1e-1	At3g60410	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.96	Contig2828_at	Contig2828	-	-	2e-50	At5g63400	ADK1 (ADENYLATE KINASE 1)	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.97	Contig2940_s_at	Contig2940	-	-	5e-6	At2g47380	cytochrome c oxidase subunit Vc family protein / COX5C family protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.96	Contig7854_at	Contig7854	-	-	2e-4	At1g78700	brassinosteroid signalling positive regulator-related	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig3420_at	Contig3420	-	-	5e-66	At5g67380	CKA1 (CASEIN KINASE ALPHA 1)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.97	Contig2821_at	Contig2821	-	-	1e-72	At3g11630	2-cys peroxiredoxin, chloroplast (BAS1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	97.6	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.9	97.1	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.1	96.2	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.1	94.1	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
2.7	92.7	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.7	92.7	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
2.5	91.9	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.4	91.4	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
2.4	91.4	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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