Co-expression analysis

Gene ID	Contig24555_at
Gene name
Homology with Arabidopsis	Similar to At2g45070: SEC61 BETA (HF=1e+0)
Module size	6 genes
NF	0.65
%ile	86.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	Contig24555_at	Contig24555	-	-	1e+0	At2g45070	SEC61 BETA	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.96	Contig17958_at	Contig17958	-	-	2e+0	At5g40370	glutaredoxin, putative	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig8882_at	Contig8882	-	-	4e-2	At3g59680	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig5234_at	Contig5234	-	-	5e-11	At1g09140	SF2/ASF-like splicing modulator (SRP30)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig9785_at	Contig9785	-	-	9e-4	At4g25620	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	Contig13332_at	Contig13332	-	-	2e+0	At1g68280	thioesterase-related	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	97.4	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.2	97.4	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.9	97.1	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.8	97.0	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.1	96.2	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.9	95.8	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.9	95.8	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.8	95.7	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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