Co-expression analysis

Gene ID	Contig2454_at
Gene name	phospholipid hydroperoxide glutathione peroxidase-like protein
Homology with Arabidopsis	Similar to At4g11600: ATGPX6 (GLUTATHIONE PEROXIDASE 6) (HF=5e-72)
Module size	27 genes
NF	0.34
%ile	46.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	95.2	0.90	Contig2454_at	Contig2454	phospholipid hydroperoxide glutathione peroxidase-like protein	-	5e-72	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.93	Contig12410_at	Contig12410	-	-	4e-1	At4g01580	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.93	Contig13434_at	Contig13434	-	-	6e-10	At4g38520	protein phosphatase 2C family protein / PP2C family protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.95	Contig4085_s_at	Contig4085	-	-	4e-4	At2g37120	DNA-binding S1FA family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.94	Contig14230_at	Contig14230	-	-	5e-1	At5g01430	Got1-like family protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.92	Contig13801_s_at	Contig13801	-	-	3e+0	At2g25409	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	Contig16599_at	Contig16599	-	-	3e-1	At4g29710	phosphodiesterase/nucleotide pyrophosphatase-related	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.93	Contig8262_at	Contig8262	-	-	2e-1	At3g15800	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	Contig14263_at	Contig14263	-	-	2e+0	At5g22650	HD2B (HISTONE DEACETYLASE 2B)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.95	Contig12720_at	Contig12720	-	-	7e+0	At5g38180	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.95	Contig1364_at	Contig1364	-	-	4e-25	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	Contig7674_at	Contig7674	-	-	2e-4	At5g61770	PPAN (PETER PAN-LIKE PROTEIN)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.94	Contig5605_at	Contig5605	-	-	2e+0	At1g08810	MYB60 (myb domain protein 60)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.94	Contig10185_at	Contig10185	-	-	8e-1	At3g54720	AMP1 (ALTERED MERISTEM PROGRAM 1)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.94	Contig12227_at	Contig12227	-	-	5e-13	At1g33290	sporulation protein-related	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.95	rbags14j23_s_at	rbags14j23	-	-	6e-1	At3g53668	CPuORF51 (Conserved peptide upstream open reading frame 51)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.93	Contig12534_at	Contig12534	-	-	4e-1	At1g69828	-	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.91	Contig726_x_at	Contig726	-	-	2e-13	At2g40205	60S ribosomal protein L41 (RPL41C)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	Contig14081_at	Contig14081	-	-	1e-1	At1g22340	AtUGT85A7 (UDP-glucosyl transferase 85A7)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.93	Contig10364_at	Contig10364	-	-	3e-4	At3g57420	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.91	Contig13148_at	Contig13148	-	-	2e+0	At4g04020	FIB (FIBRILLIN)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	Contig7625_at	Contig7625	-	-	4e-1	At5g36659	-	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.94	Contig4569_at	Contig4569	-	-	5e-6	At5g04590	SIR	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.95	Contig23795_at	Contig23795	-	-	1e+1	At5g49220	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	Contig1192_s_at	Contig1192	-	-	7e-29	At4g38970	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.93	Contig7885_at	Contig7885	-	-	2e-16	At1g66330	senescence-associated family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.93	Contig7336_s_at	Contig7336	-	-	5e+0	At3g26520	TIP2 (TONOPLAST INTRINSIC PROTEIN 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.4	99.3	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.5	99.0	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.3	99.0	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.4	96.6	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.3	96.4	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.1	96.2	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.8	95.7	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.5	95.1	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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