Co-expression analysis

Gene ID Contig24443_at
Gene name
Homology with ArabidopsisSimilar to At2g34430: LHB1B1 (HF=1e+0)
Module size 38 genes
NF 0.87
%ile 98.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9298.40.95Contig24443_atContig24443--1e+0At2g34430LHB1B1O.I.H.G.S.X.
0.99100.00.97Contig5392_atContig5392--2e-5At3g16270-O.I.H.G.S.X.
0.99100.00.97HM03H17u_atHM03H17u--9e-1At4g24980-O.I.H.G.S.X.
0.9599.20.96Contig16448_atContig16448--2e-7At5g41940RabGAP/TBC domain-containing proteinO.I.H.G.S.X.
0.9599.20.97Contig23696_atContig23696--2e-5At5g43920transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.9599.20.97Contig13083_atContig13083--2e-3At5g05350unknown proteinO.I.H.G.S.X.
0.9498.90.97Contig18666_atContig18666--2e+0At4g13620AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.9498.90.97Contig17154_atContig17154--1e+0At2g15270unknown proteinO.I.H.G.S.X.
0.9398.70.96Contig21153_atContig21153--5e+0At5g52980unknown proteinO.I.H.G.S.X.
0.9298.40.96Contig6567_atContig6567--2e-1At5g45010ATDSS1(V) (Arabidopsis dss1 homolog on chromosome V)O.I.H.G.S.X.
0.9198.10.97Contig13707_atContig13707--3e-5At4g05090inositol monophosphatase family proteinO.I.H.G.S.X.
0.8995.40.95Contig23826_atContig23826--1e+0At5g22000RHF2A (RING-H2 GROUP F2A)O.I.H.G.S.X.
0.8995.40.97Contig15860_atContig15860--1e-13At1g34420leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.
0.8995.40.97EBan01_SQ004_O17_atEBan01_SQ004_O17--4e+0At5g64470unknown proteinO.I.H.G.S.X.
0.8795.00.96Contig11220_s_atContig11220--4e+0At4g10160zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.8795.00.97Contig20288_atContig20288--1e+0At1g22970unknown proteinO.I.H.G.S.X.
0.8795.00.97Contig9898_atContig9898--3e-3At2g35780scpl26 (serine carboxypeptidase-like 26)O.I.H.G.S.X.
0.8694.80.97Contig17376_atContig17376--2e+0At5g16090-O.I.H.G.S.X.
0.8694.80.97EBan01_SQ003_J01_atEBan01_SQ003_J01--2e-1At2g41905unknown proteinO.I.H.G.S.X.
0.8494.30.97Contig14328_atContig14328--5e-8At4g08150KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)O.I.H.G.S.X.
0.8494.30.97Contig18318_atContig18318--2e+0At4g23432unknown proteinO.I.H.G.S.X.
0.8394.00.96Contig6434_atContig6434--3e-9At1g07310C2 domain-containing proteinO.I.H.G.S.X.
0.8293.10.97Contig10604_atContig10604--1e-10At1g18650PDCB3 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3)O.I.H.G.S.X.
0.8293.10.97Contig11217_atContig11217--6e-4At3g44750HDA3 (HISTONE DEACETYLASE 3)O.I.H.G.S.X.
0.8293.10.97Contig9959_atContig9959--4e-4At1g02840SR1O.I.H.G.S.X.
0.8293.10.97EBan01_SQ002_F13_atEBan01_SQ002_F13--3e-1At3g52230unknown proteinO.I.H.G.S.X.
0.8192.80.97Contig24207_atContig24207--4e-4At5g57850aminotransferase class IV family proteinO.I.H.G.S.X.
0.8192.80.97Contig3096_s_atContig3096--3e+0At3g17170RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3)O.I.H.G.S.X.
0.8192.80.97Contig12689_atContig12689--1e+0At5g44860unknown proteinO.I.H.G.S.X.
0.8192.80.96HM01L19w_atHM01L19w--3e-4At1g79450ALIS5 (ALA-Interacting Subunit 5)O.I.H.G.S.X.
0.8192.80.97Contig10011_atContig10011--1e+0At2g43290MSS3 (multicopy suppressors of snf4 deficiency in yeast 3)O.I.H.G.S.X.
0.8192.80.96Contig25064_atContig25064--1e+0At1g54215proline-rich family proteinO.I.H.G.S.X.
0.8192.80.97Contig8820_atContig8820--2e+0At4g19270unknown proteinO.I.H.G.S.X.
0.8192.80.97Contig13888_atContig13888--3e-2At5g19940plastid-lipid associated protein PAP-related / fibrillin-relatedO.I.H.G.S.X.
0.8192.80.97HM03M17u_atHM03M17u--4e-3At2g36100integral membrane family proteinO.I.H.G.S.X.
0.8192.80.97Contig20968_atContig20968--2e-6At1g15110phosphatidyl serine synthase family proteinO.I.H.G.S.X.
0.7991.40.98Contig3097_atContig3097--4e+0At5g46730glycine-rich proteinO.I.H.G.S.X.
0.7891.20.97Contig20753_atContig20753--5e-7At2g20900diacylglycerol kinase, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.299.5GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
14.699.5GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
9.399.0GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.098.4GSM238420Endosperm 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.997.9GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.797.7GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.496.6GSM282025Control_dryseed_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.096.0GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.695.3GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.194.1GSM238421Endosperm 0 h; Seed germination Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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