Co-expression analysis

Gene ID	Contig2443_at
Gene name
Homology with Arabidopsis	Similar to At5g05230: ubiquitin-protein ligase (HF=5e-3)
Module size	6 genes
NF	0.29
%ile	37.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.95	Contig2443_at	Contig2443	-	-	5e-3	At5g05230	ubiquitin-protein ligase	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig8266_at	Contig8266	-	-	2e+0	At1g44318	hemb2	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig7306_at	Contig7306	-	-	1e+0	At3g17820	ATGSKB6	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig6406_at	Contig6406	-	-	7e-6	At5g48220	indole-3-glycerol phosphate synthase, putative	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig901_x_at	Contig901	-	-	0	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.95	Contig7191_at	Contig7191	-	-	3e+0	At5g17950	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	97.3	GSM363465	5 mM B(OH)3 treatment (5B) - rep3	GSE14521	Late response to boron toxicity in barley leaves
4.6	96.8	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4	96.6	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9	95.8	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.8	95.7	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.7	95.5	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6	95.3	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
3.2	94.3	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

A co-expression module including the maize gene, Zm.13362.1.S1_at, orthologous to the query gene, Contig2443_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	Zm.13362.1.S1_at	At5g05230	calmodulin binding protein	-	3e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.	Please select
0.91	99.0	Zm.2315.1.A1_at	At5g05230	nodulin-like protein	-	4e-4	At3g18200	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.80	94.0	Zm.2318.1.A1_at	At5g05230	-	-	9e-1	At1g23710	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	Zm.12657.1.A1_at	At5g05230	-	-	1e-1	At1g11580	PMEPCRA (METHYLESTERASE PCR A)	O.I.	H.G.	S.X.	Please select
0.57	75.1	Zm.2459.1.S1_at	At5g05230	hypothetical protein LOC100274521	-	1e+0	At3g12370	ribosomal protein L10 family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.16211.1.S1_at	At5g05230	-	-	2e+0	At2g25590	agenet domain-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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