Co-expression analysis

Gene ID Contig2443_at
Gene name
Homology with ArabidopsisSimilar to At5g05230: ubiquitin-protein ligase (HF=5e-3)
Module size 6 genes
NF 0.29
%ile 37.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.95Contig2443_atContig2443--5e-3At5g05230ubiquitin-protein ligaseO.I.H.G.S.X.
0.4458.90.95Contig8266_atContig8266--2e+0At1g44318hemb2O.I.H.G.S.X.
0.4053.10.95Contig7306_atContig7306--1e+0At3g17820ATGSKB6O.I.H.G.S.X.
0.3138.60.95Contig6406_atContig6406--7e-6At5g48220indole-3-glycerol phosphate synthase, putativeO.I.H.G.S.X.
0.1716.90.95Contig901_x_atContig901--0At1g56070LOS1O.I.H.G.S.X.
0.1412.90.95Contig7191_atContig7191--3e+0At5g17950unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.197.3GSM3634655 mM B(OH)3 treatment (5B) - rep3GSE14521Late response to boron toxicity in barley leavesLink to GEO
4.696.8GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.496.6GSM261075Albina e-16 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.995.8GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.895.7GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.795.5GSM261069Albina f-17 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.695.3GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM363461Control (C) - rep2GSE14521Late response to boron toxicity in barley leavesLink to GEO
3.294.3GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.24782.1.A1_at, orthologous to the query gene, Contig2443_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.2Ta.24782.1.A1_atAt5g05230--3e-1At5g05230ubiquitin-protein ligaseO.I.H.G.S.X.
0.1922.4Ta.3212.1.A1_a_atAt5g05230--4e+0At2g31480unknown proteinO.I.H.G.S.X.
0.1011.3Ta.1175.1.S1_atAt5g05230--7e+0At5g43140peroxisomal membrane 22 kDa family proteinO.I.H.G.S.X.
0.089.4TaAffx.38575.1.A1_atAt5g05230--3e-1At5g45950GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.056.7TaAffx.21184.1.S1_atAt5g05230--1e+0At2g33796-O.I.H.G.S.X.
0.034.7TaAffx.13383.1.A1_atAt5g05230--8e-1At1g17800plastocyanin-like domain-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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