CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig2443_at

Gene name
Homology with Arabidopsis Similar to At5g05230: ubiquitin-protein ligase (HF=5e-3)

Module size 6 genes

NF 0.29

%ile 37.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 84.7 0.95 Contig2443_at Contig2443 - - 5e-3 At5g05230 ubiquitin-protein ligase O.I. H.G. S.X.
0.44 58.9 0.95 Contig8266_at Contig8266 - - 2e+0 At1g44318 hemb2 O.I. H.G. S.X.
0.40 53.1 0.95 Contig7306_at Contig7306 - - 1e+0 At3g17820 ATGSKB6 O.I. H.G. S.X.
0.31 38.6 0.95 Contig6406_at Contig6406 - - 7e-6 At5g48220 indole-3-glycerol phosphate synthase, putative O.I. H.G. S.X.
0.17 16.9 0.95 Contig901_x_at Contig901 - - 0 At1g56070 LOS1 O.I. H.G. S.X.
0.14 12.9 0.95 Contig7191_at Contig7191 - - 3e+0 At5g17950 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.1 97.3 GSM363465 5 mM B(OH)3 treatment (5B) - rep3 GSE14521 Late response to boron toxicity in barley leaves
4.6 96.8 GSM261070 Albina f-17 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4 96.6 GSM261075 Albina e-16 Control rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9 95.8 GSM215730 Control (DMSO) treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
3.8 95.7 GSM261074 Albina e-16 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.7 95.5 GSM261069 Albina f-17 Control rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6 95.3 GSM238426 Endosperm 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.3 94.6 GSM238424 Endosperm 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.3 94.6 GSM363461 Control (C) - rep2 GSE14521 Late response to boron toxicity in barley leaves
3.2 94.3 GSM215727 Control (DMSO) treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

A co-expression module including the rice gene, Os01g0618000, orthologous to the query gene, Contig2443_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os01g0618000 At5g05230 - Exonuclease domain containing protein 6e-1 At5g43410 ethylene-responsive factor, putative O.I. H.G. S.X.
0.19 15.1 Os05g0427100 At5g05230 - Octicosapeptide/Phox/Bem1p domain containingprotein 9e-1 At2g32840 proline-rich family protein O.I. H.G. S.X.
0.05 2.5 Os01g0276400 At5g05230 - Presenilin 2 (PS-2) (ALG-3) (Alzheimer disease 4homolog). Splice isoform 2 4e-12 At1g08700 presenilin family protein O.I. H.G. S.X.
0.01 0.5 Os04g0672900 At5g05230 - Conserved hypothetical protein 6e-8 At4g31080 unknown protein O.I. H.G. S.X.
0.01 0.5 Os08g0480500 At5g05230 - Surfeit locus 5 family protein 6e-4 At1g07950 surfeit locus protein 5 family protein / SURF5 family protein O.I. H.G. S.X.
0.01 0.5 Os09g0550000 At5g05230 - Bromodomain containing protein 6e-18 At1g20670 DNA-binding bromodomain-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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