Co-expression analysis

Gene ID	Contig24340_at
Gene name
Homology with Arabidopsis	Similar to At1g76690: OPR2 (HF=2e-2)
Module size	12 genes
NF	0.43
%ile	59.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.58	74.9	0.86	Contig24340_at	Contig24340	-	-	2e-2	At1g76690	OPR2	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.90	Contig24536_at	Contig24536	-	-	1e-3	At5g58010	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.88	rbaal14c24_at	rbaal14c24	-	-	1e+0	At3g14640	CYP72A10	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.90	Contig15139_at	Contig15139	-	-	9e-2	At1g02180	ferredoxin-related	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.92	Contig5427_at	Contig5427	-	-	7e-14	At2g20900	diacylglycerol kinase, putative	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.91	HVSMEf0001F16r2_s_at	HVSMEf0001F16r2	-	-	2e+0	At1g64490	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.92	Contig26151_at	Contig26151	-	-	1e+0	At1g49990	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.88	Contig19223_at	Contig19223	-	-	3e-1	At5g66110	metal ion binding	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.91	Contig5636_at	Contig5636	-	-	7e-1	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.90	Contig24145_at	Contig24145	-	-	1e-1	At1g33100	MATE efflux family protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.89	HV10D05u_x_at	HV10D05u	-	-	5e+0	At1g30190	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.90	Contig24930_at	Contig24930	-	-	1e+0	At1g22180	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	96.9	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.6	96.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2	96.3	GSM372953	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.9	95.8	GSM372991	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.9	95.8	GSM372995	genotype: 11542 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM372954	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.0	93.8	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0	93.8	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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