Co-expression analysis

Gene ID	Contig2433_s_at
Gene name
Homology with Arabidopsis	Similar to At4g29260: acid phosphatase class B family protein (HF=9e-9)
Module size	6 genes
NF	0.30
%ile	39.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.93	Contig2433_s_at	Contig2433	-	-	9e-9	At4g29260	acid phosphatase class B family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	Contig10495_s_at	Contig10495	-	-	4e-3	At3g16190	isochorismatase hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig12544_s_at	Contig12544	-	-	2e+1	At5g03100	F-box family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig11605_at	Contig11605	-	-	4e-8	At5g47310	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.94	EBma01_SQ005_G16_at	EBma01_SQ005_G16	-	-	3e+0	At2g01290	ribose-5-phosphate isomerase	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.94	Contig9428_at	Contig9428	-	-	6e-4	At5g66550	Maf family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.9	98.3	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM398249	Martin_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.1	98.0	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.7	97.7	GSM398251	Martin_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.4	97.5	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.1	97.3	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.8	97.0	GSM398250	Martin_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6	95.3	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.1	94.1	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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