Co-expression analysis

Gene ID Contig24327_at
Gene name
Homology with ArabidopsisSimilar to At2g32470: F-box family protein-related (HF=2e+0)
Module size 6 genes
NF 0.48
%ile 66.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.91Contig24327_atContig24327--2e+0At2g32470F-box family protein-relatedO.I.H.G.S.X.
0.7388.70.92HVSMEg0015A14r2_atHVSMEg0015A14r2--1e+0At5g03905hesB-like domain-containing proteinO.I.H.G.S.X.
0.6784.70.93Contig982_atContig982--2e-1At5g20520WAV2 (WAVY GROWTH 2)O.I.H.G.S.X.
0.6178.70.91Contig21303_atContig21303--2e+0At2g14890AGP9 (ARABINOGALACTAN PROTEIN 9)O.I.H.G.S.X.
0.2935.50.91Contig14918_atContig14918--7e-3At5g64960CDKC2 (Cyclin dependent kinase group C 2)O.I.H.G.S.X.
0.2935.50.92HP01O07w_atHP01O07w--3e+0At5g16490RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6380.30.87Contig17756_atContig17756--2e+0At5g56330ACA8 (ALPHA CARBONIC ANHYDRASE 8)O.I.H.G.S.X.
0.5572.00.88Contig10293_atContig10293--6e-17At4g27880seven in absentia (SINA) family proteinO.I.H.G.S.X.
0.5066.90.89rbags23g22_atrbags23g22--5e+0At5g16880VHS domain-containing protein / GAT domain-containing proteinO.I.H.G.S.X.
0.4762.20.84Contig7227_atContig7227--7e-14At3g54540ATGCN4O.I.H.G.S.X.
0.4661.00.84Contig20303_atContig20303--3e-1At1g54620invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.4458.90.92HVSMEg0017M01r2_atHVSMEg0017M01r2--5e+0At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)O.I.H.G.S.X.
0.4053.10.90Contig10612_atContig10612--1e+0At3g01540DRH1 (DEAD BOX RNA HELICASE 1)O.I.H.G.S.X.
0.3647.10.88HO15L08S_atHO15L08S--7e-1At4g33465SCRL22 (SCR-Like 22)O.I.H.G.S.X.
0.3647.10.82HV_CEa0009C05r2_s_atHV_CEa0009C05r2--9e+0At5g50175unknown proteinO.I.H.G.S.X.
0.3342.60.85HV_CEa0011A01r2_atHV_CEa0011A01r2--4e+0At3g54430SRS6 (SHI-RELATED SEQUENCE 6)O.I.H.G.S.X.
0.3342.60.91Contig18532_atContig18532--3e+0At2g44310calcium-binding EF hand family proteinO.I.H.G.S.X.
0.3240.30.83Contig15799_atContig15799--2e-8At4g00860ATOZI1O.I.H.G.S.X.
0.3240.30.89HV12J02u_s_atHV12J02u--2e-1At2g07678unknown proteinO.I.H.G.S.X.
0.3240.30.90HO07N21S_atHO07N21S--9e-1At3g28917MIF2 (MINI ZINC FINGER 2)O.I.H.G.S.X.
0.3138.60.87Contig23884_atContig23884--1e+0At3g60590unknown proteinO.I.H.G.S.X.
0.3037.00.90Contig14743_atContig14743--5e+0At5g20885zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2935.50.88Contig78_s_atContig78--4e-5At1g15690AVP1O.I.H.G.S.X.
0.2935.50.83Contig15853_atContig15853--5e+0At1g28395unknown proteinO.I.H.G.S.X.
0.2732.10.88Contig11737_atContig11737--9e+0At5g46930invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.2732.10.89Contig17047_atContig17047--2e+0At3g13440methyltransferase/ nucleic acid bindingO.I.H.G.S.X.
0.2630.40.90Contig7945_atContig7945--6e-57At1g53310ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1)O.I.H.G.S.X.
0.2528.90.85Contig12569_atContig12569--1e+0At4g01680MYB55 (myb domain protein 55)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.698.6GSM16082238% SWC rep3GSE6990Barley drought stressLink to GEO
7.598.6GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
5.997.9GSM261041Dicktoo-deacclimation-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
5.997.9GSM261032Dicktoo control-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
5.897.8GSM261040Dicktoo-deacclimation-rep2GSE10329Low temperature stress in cv. DicktooLink to GEO
5.897.8GSM1608317% SWC rep1GSE6990Barley drought stressLink to GEO
5.497.5GSM261030Dicktoo-control-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
5.297.4GSM16082619% SWC rep3GSE6990Barley drought stressLink to GEO
5.297.4GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
5.097.2GSM160464drought control rep1GSE6990Barley drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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