Co-expression analysis

Gene ID Contig24327_at
Gene name
Homology with ArabidopsisSimilar to At2g32470: F-box family protein-related (HF=2e+0)
Module size 6 genes
NF 0.48
%ile 66.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.91Contig24327_atContig24327--2e+0At2g32470F-box family protein-relatedO.I.H.G.S.X.
0.7388.70.92HVSMEg0015A14r2_atHVSMEg0015A14r2--1e+0At5g03905hesB-like domain-containing proteinO.I.H.G.S.X.
0.6784.70.93Contig982_atContig982--2e-1At5g20520WAV2 (WAVY GROWTH 2)O.I.H.G.S.X.
0.6178.70.91Contig21303_atContig21303--2e+0At2g14890AGP9 (ARABINOGALACTAN PROTEIN 9)O.I.H.G.S.X.
0.2935.50.91Contig14918_atContig14918--7e-3At5g64960CDKC2 (Cyclin dependent kinase group C 2)O.I.H.G.S.X.
0.2935.50.92HP01O07w_atHP01O07w--3e+0At5g16490RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.698.6GSM16082238% SWC rep3GSE6990Barley drought stressLink to GEO
7.598.6GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
5.997.9GSM261041Dicktoo-deacclimation-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
5.997.9GSM261032Dicktoo control-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
5.897.8GSM261040Dicktoo-deacclimation-rep2GSE10329Low temperature stress in cv. DicktooLink to GEO
5.897.8GSM1608317% SWC rep1GSE6990Barley drought stressLink to GEO
5.497.5GSM261030Dicktoo-control-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
5.297.4GSM16082619% SWC rep3GSE6990Barley drought stressLink to GEO
5.297.4GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
5.097.2GSM160464drought control rep1GSE6990Barley drought stressLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.584.1.S1_a_at, orthologous to the query gene, Contig24327_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8094.0Zm.584.1.S1_a_atAt2g32470pericarp color1-1e-8At2g47460MYB12 (MYB DOMAIN PROTEIN 12)O.I.H.G.S.X.
0.9199.0ZmAffx.1325.1.S1_atAt2g32470--4e-2At1g49910WD-40 repeat family protein / mitotic checkpoint protein, putativeO.I.H.G.S.X.
0.9199.0ZmAffx.1326.1.S1_atAt2g32470--0Atmg00570-O.I.H.G.S.X.
0.6785.8ZmAffx.1522.1.S1_s_atAt2g32470--3e-38Atcg00800-O.I.H.G.S.X.
0.6785.8Zm.16259.3.A1_a_atAt2g32470hypothetical protein LOC100273269-2e+0At3g20865AGP40 (arabinogalactan-protein 40)O.I.H.G.S.X.
0.6785.8Zm.6612.1.S1_atAt2g32470hypothetical protein LOC100279969-2e-1At1g64380AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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