Co-expression analysis

Gene ID Contig24327_at
Gene name
Homology with ArabidopsisSimilar to At2g32470: F-box family protein-related (HF=2e+0)
Module size 6 genes
NF 0.48
%ile 66.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.91Contig24327_atContig24327--2e+0At2g32470F-box family protein-relatedO.I.H.G.S.X.
0.7388.70.92HVSMEg0015A14r2_atHVSMEg0015A14r2--1e+0At5g03905hesB-like domain-containing proteinO.I.H.G.S.X.
0.6784.70.93Contig982_atContig982--2e-1At5g20520WAV2 (WAVY GROWTH 2)O.I.H.G.S.X.
0.6178.70.91Contig21303_atContig21303--2e+0At2g14890AGP9 (ARABINOGALACTAN PROTEIN 9)O.I.H.G.S.X.
0.2935.50.91Contig14918_atContig14918--7e-3At5g64960CDKC2 (Cyclin dependent kinase group C 2)O.I.H.G.S.X.
0.2935.50.92HP01O07w_atHP01O07w--3e+0At5g16490RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.698.6GSM16082238% SWC rep3GSE6990Barley drought stressLink to GEO
7.598.6GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
5.997.9GSM261041Dicktoo-deacclimation-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
5.997.9GSM261032Dicktoo control-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
5.897.8GSM261040Dicktoo-deacclimation-rep2GSE10329Low temperature stress in cv. DicktooLink to GEO
5.897.8GSM1608317% SWC rep1GSE6990Barley drought stressLink to GEO
5.497.5GSM261030Dicktoo-control-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
5.297.4GSM16082619% SWC rep3GSE6990Barley drought stressLink to GEO
5.297.4GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
5.097.2GSM160464drought control rep1GSE6990Barley drought stressLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1619382_at, orthologous to the query gene, Contig24327_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7792.31619382_atAt2g32470hypothetical protein LOC100251065-2e-27At1g48240ATNPSN12O.I.H.G.S.X.
0.7390.81621050_atAt2g32470hypothetical protein LOC100263528-6e-3At3g01910SOX (SULFITE OXIDASE)O.I.H.G.S.X.
0.4057.71620246_atAt2g32470hypothetical protein LOC100241159-3e-17At1g19800TGD1 (TRIGALACTOSYLDIACYLGLYCEROL 1)O.I.H.G.S.X.
0.3548.51617099_atAt2g32470hypothetical protein LOC100251893-1e+0At5g50335unknown proteinO.I.H.G.S.X.
0.2937.71618747_atAt2g32470hypothetical protein LOC100261543-7e-8At1g16460ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2)O.I.H.G.S.X.
0.2327.51619780_atAt2g32470hypothetical protein LOC100261596-8e-25At2g26930ATCDPMEK (4-(CYTIDINE 5'-PHOSPHO)-2-C-METHYL-D-ERITHRITOL KINASE)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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