Co-expression analysis

Gene ID	Contig24327_at
Gene name
Homology with Arabidopsis	Similar to At2g32470: F-box family protein-related (HF=2e+0)
Module size	6 genes
NF	0.48
%ile	66.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.91	Contig24327_at	Contig24327	-	-	2e+0	At2g32470	F-box family protein-related	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.92	HVSMEg0015A14r2_at	HVSMEg0015A14r2	-	-	1e+0	At5g03905	hesB-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.93	Contig982_at	Contig982	-	-	2e-1	At5g20520	WAV2 (WAVY GROWTH 2)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.91	Contig21303_at	Contig21303	-	-	2e+0	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.91	Contig14918_at	Contig14918	-	-	7e-3	At5g64960	CDKC2 (Cyclin dependent kinase group C 2)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.92	HP01O07w_at	HP01O07w	-	-	3e+0	At5g16490	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.6	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
7.5	98.6	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
5.9	97.9	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
5.9	97.9	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
5.8	97.8	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
5.8	97.8	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
5.4	97.5	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
5.2	97.4	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
5.2	97.4	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
5.0	97.2	GSM160464	drought control rep1	GSE6990	Barley drought stress

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.249.880.A1_at, orthologous to the query gene, Contig24327_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	PtpAffx.249.880.A1_at	At2g32470	-	-	5e-1	At2g21290	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.6289.5.A1_at	At2g32470	hypothetical protein	-	2e-5	At1g69500	electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.209012.1.S1_at	At2g32470	-	-	1e-1	At5g38820	amino acid transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.224785.1.S1_at	At2g32470	hypothetical protein	-	4e-1	At2g32800	AP4.3A	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.249.578.S1_at	At2g32470	hypothetical protein	-	4e-1	At1g01550	BPS1 (BYPASS 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.00	0.4	Ptp.1672.2.A1_at	At2g32470	hypothetical protein	-	5e-34	At4g33410	signal peptide peptidase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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