CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig24327_at

Gene name
Homology with Arabidopsis Similar to At2g32470: F-box family protein-related (HF=2e+0)

Module size 6 genes

NF 0.48

%ile 66.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 66.9 0.91 Contig24327_at Contig24327 - - 2e+0 At2g32470 F-box family protein-related O.I. H.G. S.X.
0.73 88.7 0.92 HVSMEg0015A14r2_at HVSMEg0015A14r2 - - 1e+0 At5g03905 hesB-like domain-containing protein O.I. H.G. S.X.
0.67 84.7 0.93 Contig982_at Contig982 - - 2e-1 At5g20520 WAV2 (WAVY GROWTH 2) O.I. H.G. S.X.
0.61 78.7 0.91 Contig21303_at Contig21303 - - 2e+0 At2g14890 AGP9 (ARABINOGALACTAN PROTEIN 9) O.I. H.G. S.X.
0.29 35.5 0.91 Contig14918_at Contig14918 - - 7e-3 At5g64960 CDKC2 (Cyclin dependent kinase group C 2) O.I. H.G. S.X.
0.29 35.5 0.92 HP01O07w_at HP01O07w - - 3e+0 At5g16490 RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.6 98.6 GSM160822 38% SWC rep3 GSE6990 Barley drought stress
7.5 98.6 GSM160819 38% SWC rep1 GSE6990 Barley drought stress
5.9 97.9 GSM261041 Dicktoo-deacclimation-rep3 GSE10329 Low temperature stress in cv. Dicktoo
5.9 97.9 GSM261032 Dicktoo control-rep3 GSE10329 Low temperature stress in cv. Dicktoo
5.8 97.8 GSM261040 Dicktoo-deacclimation-rep2 GSE10329 Low temperature stress in cv. Dicktoo
5.8 97.8 GSM160831 7% SWC rep1 GSE6990 Barley drought stress
5.4 97.5 GSM261030 Dicktoo-control-rep1 GSE10329 Low temperature stress in cv. Dicktoo
5.2 97.4 GSM160826 19% SWC rep3 GSE6990 Barley drought stress
5.2 97.4 GSM261022 ABA-Control-rep2 GSE10328 ABA experiment
5.0 97.2 GSM160464 drought control rep1 GSE6990 Barley drought stress

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g32470, orthologous to the query gene, Contig24327_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.40 50.8 At2g32470 817808 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.60 75.7 At1g13370 837897 histone H3, putative F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO O.I. H.G. S.X.
0.33 38.1 At1g62690 842566 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.29 30.3 At2g31470 817705 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.22 17.5 At1g66310 842948 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage