Co-expression analysis

Gene ID	Contig24323_at
Gene name
Homology with Arabidopsis	Similar to At2g46505: SDH4 (HF=1e+0)
Module size	38 genes
NF	0.25
%ile	31.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.6	0.92	Contig24323_at	Contig24323	-	-	1e+0	At2g46505	SDH4	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.94	HB08N07r_at	HB08N07r	-	-	2e-1	At3g04590	DNA-binding family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	Contig19659_at	Contig19659	-	-	4e-19	At1g55520	TBP2 (TATA BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.93	Contig25388_at	Contig25388	-	-	5e-6	At2g19790	clathrin adaptor complex small chain family protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.95	HV_CEa0014A19r2_at	HV_CEa0014A19r2	-	-	3e+0	At1g58160	jacalin lectin family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig16886_at	Contig16886	-	-	5e+0	At5g60460	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.94	Contig21722_at	Contig21722	-	-	2e+0	At1g55780	metal ion binding	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.91	Contig4320_at	Contig4320	-	-	3e+0	At5g53030	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig21186_at	Contig21186	-	-	1e-1	At4g25720	QC (GLUTAMINYL CYCLASE)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.94	HU11D17u_s_at	HU11D17u	-	-	4e+0	At5g50250	31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig7277_at	Contig7277	-	-	3e-8	At5g11110	ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.93	Contig2290_s_at	Contig2290	-	-	2e-18	At2g19740	60S ribosomal protein L31 (RPL31A)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.92	Contig15097_at	Contig15097	-	-	3e-1	At5g51720	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.93	Contig13253_at	Contig13253	-	-	1e+0	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.92	Contig18288_s_at	Contig18288	-	-	1e+0	At1g73325	trypsin and protease inhibitor family protein / Kunitz family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	Contig14225_at	Contig14225	-	-	2e+0	At1g34020	transporter-related	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig8180_at	Contig8180	-	-	5e-2	At5g47090	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig17591_at	Contig17591	-	-	1e-8	At3g06350	MEE32 (MATERNAL EFFECT EMBRYO ARREST 32)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig15509_at	Contig15509	-	-	2e-3	At1g10522	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.94	Contig17753_at	Contig17753	-	-	8e-2	At3g09880	ATB' BETA	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	Contig15463_at	Contig15463	-	-	5e+0	At5g11930	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.92	Contig21692_at	Contig21692	-	-	3e+0	At2g35970	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	Contig19050_at	Contig19050	-	-	4e-1	At2g41230	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	Contig14340_at	Contig14340	-	-	5e+0	At4g06634	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig14241_at	Contig14241	-	-	2e+0	At3g16250	NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig8925_at	Contig8925	-	-	3e+0	At5g66060	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig14904_at	Contig14904	-	-	2e+0	At2g28330	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig11968_at	Contig11968	-	-	3e-1	At2g37000	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	Contig841_x_at	Contig841	-	-	1e-35	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.94	Contig15299_at	Contig15299	-	-	1e-1	At4g25010	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.93	HK04C21r_at	HK04C21r	-	-	8e-1	At5g43401	-	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	Contig11565_at	Contig11565	-	-	2e+0	At5g26770	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.94	Contig16455_at	Contig16455	-	-	1e-1	At3g46880	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig11867_s_at	Contig11867	-	-	4e-1	At1g03790	SOM (SOMNUS)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.94	Contig5140_at	Contig5140	-	-	3e-5	At2g16920	UBC23 (UBIQUITIN-CONJUGATING ENZYME 23)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.95	Contig1788_at	Contig1788	-	-	8e-27	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.96	HS09L19u_s_at	HS09L19u	-	-	2e+0	At3g30220	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.95	Contig8959_at	Contig8959	-	-	2e+0	At3g33393	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	97.4	GSM130803	JA, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
4.8	97.0	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.1	94.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0	93.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0	93.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM261029	ABA-Late-rep3	GSE10328	ABA experiment
2.6	92.3	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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