Co-expression analysis

Gene ID	Contig24322_at
Gene name
Homology with Arabidopsis	Similar to At2g04425: LCR82 (Low-molecular-weight cysteine-rich 82) (HF=5e+0)
Module size	6 genes
NF	0.46
%ile	64.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.95	Contig24322_at	Contig24322	-	-	5e+0	At2g04425	LCR82 (Low-molecular-weight cysteine-rich 82)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.95	Contig7588_at	Contig7588	-	-	5e-1	At4g26230	60S ribosomal protein L31 (RPL31B)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig13555_at	Contig13555	-	-	4e-1	Atmg01290	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig8833_at	Contig8833	-	-	2e+0	At1g63855	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig15509_at	Contig15509	-	-	2e-3	At1g10522	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	Contig23686_at	Contig23686	-	-	4e+0	At2g10014	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	96.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.2	94.3	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
3.1	94.1	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.0	93.8	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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