Co-expression analysis

Gene ID	Contig24303_at
Gene name
Homology with Arabidopsis	Similar to At3g09800: protein binding (HF=3e-1)
Module size	6 genes
NF	0.57
%ile	79.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.96	Contig24303_at	Contig24303	-	-	3e-1	At3g09800	protein binding	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig17823_at	Contig17823	-	-	2e+0	At5g52720	metal ion binding	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig10540_at	Contig10540	-	-	7e-8	At3g57890	tubulin-specific chaperone C-related	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig13652_at	Contig13652	-	-	8e-7	At1g32090	early-responsive to dehydration protein-related / ERD protein-related	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig16054_at	Contig16054	-	-	4e-1	At1g06830	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig4360_at	Contig4360	-	-	2e-6	At5g61500	ATG3	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.9	98.3	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.9	97.9	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.1	97.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.9	97.1	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.6	96.8	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1	96.2	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.0	96.0	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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