Co-expression analysis

Gene ID	Contig24298_at
Gene name
Homology with Arabidopsis	Similar to At1g11690: unknown protein (HF=8e-2)
Module size	26 genes
NF	0.26
%ile	32.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	98.9	0.94	Contig24298_at	Contig24298	-	-	8e-2	At1g11690	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig15355_at	Contig15355	-	-	5e+0	At2g37570	SLT1 (sodium- and lithium-tolerant 1)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig11912_at	Contig11912	-	-	3e+0	At5g27340	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig19064_at	Contig19064	-	-	3e+0	At4g09460	ATMYB6	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig1454_at	Contig1454	-	-	4e-52	At3g25520	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.94	Contig12341_at	Contig12341	-	-	9e-7	At1g54610	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	Contig1122_s_at	Contig1122	-	-	1e-22	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	Contig7821_at	Contig7821	-	-	3e-3	At1g25420	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig11757_at	Contig11757	-	-	3e-1	At1g55365	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig5733_at	Contig5733	-	-	2e+0	At5g47670	NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	Contig2885_at	Contig2885	-	-	2e+0	At3g20060	UBC19 (ubiquitin-conjugating enzyme19)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.96	Contig5540_at	Contig5540	-	-	1e-52	At3g05840	ATSK12	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.94	Contig4469_at	Contig4469	-	-	4e-63	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	Contig5285_at	Contig5285	-	-	1e+0	At2g36210	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	Contig1512_at	Contig1512	-	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	Contig8444_at	Contig8444	-	-	3e-6	At2g28250	NCRK	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig13033_at	Contig13033	-	-	2e-6	At4g24610	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	Contig6631_at	Contig6631	-	-	5e-1	At1g72960	root hair defective 3 GTP-binding (RHD3) family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig4414_at	Contig4414	-	-	5e-3	At2g03320	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.96	Contig4901_s_at	Contig4901	-	-	5e+0	At5g01380	transcription factor	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	Contig16840_at	Contig16840	-	-	4e-1	At5g22545	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.95	Contig7830_s_at	Contig7830	-	-	3e-22	At2g02860	SUT2 (SUCROSE TRANSPORTER 2)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig13081_at	Contig13081	-	-	9e-2	At3g25573	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig5226_at	Contig5226	-	-	1e-1	At1g79790	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.97	Contig6905_s_at	Contig6905	-	-	2e+0	At4g19620	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.95	Contig22861_at	Contig22861	-	-	7e+0	At3g59880	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	97.7	GSM311205	28-4_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.1	96.2	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.2	94.3	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.8	93.1	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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