Co-expression analysis

Gene ID Contig24298_at
Gene name
Homology with ArabidopsisSimilar to At1g11690: unknown protein (HF=8e-2)
Module size 26 genes
NF 0.26
%ile 32.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9498.90.94Contig24298_atContig24298--8e-2At1g11690unknown proteinO.I.H.G.S.X.
0.4053.10.95Contig15355_atContig15355--5e+0At2g37570SLT1 (sodium- and lithium-tolerant 1)O.I.H.G.S.X.
0.4053.10.96Contig11912_atContig11912--3e+0At5g27340unknown proteinO.I.H.G.S.X.
0.4053.10.96Contig19064_atContig19064--3e+0At4g09460ATMYB6O.I.H.G.S.X.
0.3849.50.96Contig1454_atContig1454--4e-52At3g25520ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)O.I.H.G.S.X.
0.3747.90.94Contig12341_atContig12341--9e-7At1g54610protein kinase family proteinO.I.H.G.S.X.
0.3037.00.95Contig1122_s_atContig1122--1e-22At1g07790HTB1O.I.H.G.S.X.
0.3037.00.96Contig7821_atContig7821--3e-3At1g25420unknown proteinO.I.H.G.S.X.
0.2935.50.96Contig11757_atContig11757--3e-1At1g55365unknown proteinO.I.H.G.S.X.
0.2630.40.96Contig5733_atContig5733--2e+0At5g47670NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)O.I.H.G.S.X.
0.2528.90.95Contig2885_atContig2885--2e+0At3g20060UBC19 (ubiquitin-conjugating enzyme19)O.I.H.G.S.X.
0.2528.90.96Contig5540_atContig5540--1e-52At3g05840ATSK12O.I.H.G.S.X.
0.2427.20.94Contig4469_atContig4469--4e-63At1g14400UBC1 (UBIQUITIN CARRIER PROTEIN 1)O.I.H.G.S.X.
0.2427.20.95Contig5285_atContig5285--1e+0At2g36210auxin-responsive family proteinO.I.H.G.S.X.
0.2326.10.96Contig1512_atContig1512--0At5g12250TUB6 (BETA-6 TUBULIN)O.I.H.G.S.X.
0.2122.60.96Contig8444_atContig8444--3e-6At2g28250NCRKO.I.H.G.S.X.
0.2021.10.95Contig13033_atContig13033--2e-6At4g24610unknown proteinO.I.H.G.S.X.
0.2021.10.96Contig6631_atContig6631--5e-1At1g72960root hair defective 3 GTP-binding (RHD3) family proteinO.I.H.G.S.X.
0.2021.10.95Contig4414_atContig4414--5e-3At2g03320unknown proteinO.I.H.G.S.X.
0.1919.60.96Contig4901_s_atContig4901--5e+0At5g01380transcription factorO.I.H.G.S.X.
0.1919.60.95Contig16840_atContig16840--4e-1At5g22545unknown proteinO.I.H.G.S.X.
0.1818.20.95Contig7830_s_atContig7830--3e-22At2g02860SUT2 (SUCROSE TRANSPORTER 2)O.I.H.G.S.X.
0.1716.90.95Contig13081_atContig13081--9e-2At3g25573unknown proteinO.I.H.G.S.X.
0.1716.90.95Contig5226_atContig5226--1e-1At1g79790haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.1514.10.97Contig6905_s_atContig6905--2e+0At4g19620unknown proteinO.I.H.G.S.X.
0.1311.60.95Contig22861_atContig22861--7e+0At3g59880unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.697.7GSM31120528-4_with_aphids_2GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
4.196.2GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
3.294.3GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.993.4GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.893.1GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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