Co-expression analysis

Gene ID Contig24296_at
Gene name
Homology with ArabidopsisSimilar to At5g03210: unknown protein (HF=2e-2)
Module size 7 genes
NF 0.17
%ile 20.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6380.30.77Contig24296_atContig24296--2e-2At5g03210unknown proteinO.I.H.G.S.X.
0.3647.10.89Contig24327_atContig24327--2e+0At2g32470F-box family protein-relatedO.I.H.G.S.X.
0.3138.60.80Contig926_x_atContig926--1e-44At2g34420LHB1B2O.I.H.G.S.X.
0.1210.40.85Contig23884_atContig23884--1e+0At3g60590unknown proteinO.I.H.G.S.X.
0.108.40.87Contig10728_atContig10728--4e+0At5g04520unknown proteinO.I.H.G.S.X.
0.097.40.89Contig17047_atContig17047--2e+0At3g13440methyltransferase/ nucleic acid bindingO.I.H.G.S.X.
0.097.40.85rbags23g22_atrbags23g22--5e+0At5g16880VHS domain-containing protein / GAT domain-containing proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.899.5GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.398.5GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.898.3GSM16082619% SWC rep3GSE6990Barley drought stressLink to GEO
6.898.3GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO
5.697.7GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.097.2GSM16082238% SWC rep3GSE6990Barley drought stressLink to GEO
4.696.8GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
4.196.2GSM1608317% SWC rep1GSE6990Barley drought stressLink to GEO
3.995.8GSM419973Lemma_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.1000.1.A1_at, orthologous to the query gene, Contig24296_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6381.1ZmAffx.1000.1.A1_atAt5g03210--3e+0At4g32290unknown proteinO.I.H.G.S.X.
0.2928.1Zm.1727.1.A1_atAt5g03210hypothetical protein LOC100277120-1e-5At1g10700ribose-phosphate pyrophosphokinase 3 / phosphoribosyl diphosphate synthetase 3 (PRS3)O.I.H.G.S.X.
0.2318.6Zm.5504.1.A1_atAt5g03210hypothetical protein LOC100273181-5e+0At2g28370-O.I.H.G.S.X.
0.1710.6Zm.17244.1.A1_atAt5g03210hypothetical protein LOC100193035-4e-1At4g2589060S acidic ribosomal protein P3 (RPP3A)O.I.H.G.S.X.
0.115.3Zm.983.2.A1_atAt5g03210hypothetical protein LOC100194356-1e-23At1g73230nascent polypeptide-associated complex (NAC) domain-containing proteinO.I.H.G.S.X.
0.041.5Zm.13556.1.S1_atAt5g03210--9e-1At5g66490unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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