Co-expression analysis

Gene ID	Contig24296_at
Gene name
Homology with Arabidopsis	Similar to At5g03210: unknown protein (HF=2e-2)
Module size	7 genes
NF	0.17
%ile	20.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.77	Contig24296_at	Contig24296	-	-	2e-2	At5g03210	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.89	Contig24327_at	Contig24327	-	-	2e+0	At2g32470	F-box family protein-related	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.80	Contig926_x_at	Contig926	-	-	1e-44	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.85	Contig23884_at	Contig23884	-	-	1e+0	At3g60590	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.87	Contig10728_at	Contig10728	-	-	4e+0	At5g04520	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.89	Contig17047_at	Contig17047	-	-	2e+0	At3g13440	methyltransferase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.85	rbags23g22_at	rbags23g22	-	-	5e+0	At5g16880	VHS domain-containing protein / GAT domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.8	99.5	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.3	98.5	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.8	98.3	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
6.8	98.3	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
5.6	97.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.0	97.2	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
4.6	96.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
4.1	96.2	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
3.9	95.8	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.111241.1.S1_at, orthologous to the query gene, Contig24296_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.41	59.6	TaAffx.111241.1.S1_at	At5g03210	-	-	5e-2	At5g28610	-	O.I.	H.G.	S.X.	Please select
0.47	67.9	TaAffx.58384.1.S1_at	At5g03210	-	-	9e-3	At1g05900	endonuclease-related	O.I.	H.G.	S.X.	Please select
0.43	62.2	TaAffx.1861.9.S1_x_at	At5g03210	-	-	3e+0	At1g07040	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	TaAffx.29362.1.S1_at	At5g03210	-	-	2e-1	At1g78150	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.29164.1.S1_at	At5g03210	-	-	1e-2	At5g10230	ANNAT7 (ANNEXIN ARABIDOPSIS 7)	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.120205.1.S1_at	At5g03210	-	-	4e+0	At3g62110	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.5820.1.S1_at	At5g03210	-	-	1e+0	At5g49490	AGL83 (AGAMOUS-LIKE 83)	O.I.	H.G.	S.X.	Please select
0.35	49.8	TaAffx.86127.1.S1_at	At5g03210	-	-	6e-1	At5g51370	F-box family protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	TaAffx.111885.1.S1_at	At5g03210	-	-	4e+0	At3g16780	60S ribosomal protein L19 (RPL19B)	O.I.	H.G.	S.X.	Please select
0.27	35.6	TaAffx.6094.1.S1_at	At5g03210	-	-	4e+0	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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