Co-expression analysis

Gene ID Contig24296_at
Gene name
Homology with ArabidopsisSimilar to At5g03210: unknown protein (HF=2e-2)
Module size 7 genes
NF 0.17
%ile 20.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6380.30.77Contig24296_atContig24296--2e-2At5g03210unknown proteinO.I.H.G.S.X.
0.3647.10.89Contig24327_atContig24327--2e+0At2g32470F-box family protein-relatedO.I.H.G.S.X.
0.3138.60.80Contig926_x_atContig926--1e-44At2g34420LHB1B2O.I.H.G.S.X.
0.1210.40.85Contig23884_atContig23884--1e+0At3g60590unknown proteinO.I.H.G.S.X.
0.108.40.87Contig10728_atContig10728--4e+0At5g04520unknown proteinO.I.H.G.S.X.
0.097.40.89Contig17047_atContig17047--2e+0At3g13440methyltransferase/ nucleic acid bindingO.I.H.G.S.X.
0.097.40.85rbags23g22_atrbags23g22--5e+0At5g16880VHS domain-containing protein / GAT domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.899.5GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.398.5GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.898.3GSM16082619% SWC rep3GSE6990Barley drought stressLink to GEO
6.898.3GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO
5.697.7GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.097.2GSM16082238% SWC rep3GSE6990Barley drought stressLink to GEO
4.696.8GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
4.196.2GSM1608317% SWC rep1GSE6990Barley drought stressLink to GEO
3.995.8GSM419973Lemma_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.CL1850Contig1_at, orthologous to the query gene, Contig24296_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5576.3PsAffx.CL1850Contig1_atAt5g03210--3e+0At5g15960KIN1O.I.H.G.S.X.
0.5979.5HgAffx.17965.1.S1_atAt5g03210--2e+0At2g23340AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.5878.8GmaAffx.14280.1.S1_atAt5g03210--1e-8At1g22710SUC2 (SUCROSE-PROTON SYMPORTER 2)O.I.H.G.S.X.
0.5778.8GmaAffx.14602.1.S1_atAt5g03210--2e-1At3g45851unknown proteinO.I.H.G.S.X.
0.5576.3GmaAffx.47834.1.A1_atAt5g03210--3e-1At4g16330oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donorsO.I.H.G.S.X.
0.3853.3GmaAffx.10787.1.S1_atAt5g03210--1e-2At5g16790-O.I.H.G.S.X.
0.3650.8HgAffx.19033.4.A1_atAt5g03210--6e-2At1g54410dehydrin family proteinO.I.H.G.S.X.
0.3243.7HgAffx.17984.1.S1_atAt5g03210--3e+0At3g24860hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.1215.1GmaAffx.12608.1.A1_atAt5g03210--2e-1At3g46380unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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