Co-expression analysis

Gene ID Contig24268_at
Gene name
Homology with ArabidopsisSimilar to At5g57345: unknown protein (HF=2e+0)
Module size 7 genes
NF 0.55
%ile 76.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.10.93Contig24268_atContig24268--2e+0At5g57345unknown proteinO.I.H.G.S.X.
0.6077.30.93Contig4494_x_atContig4494--5e+0At5g55508unknown proteinO.I.H.G.S.X.
0.5066.90.92Contig9113_s_atContig9113--2e-26At5g11980conserved oligomeric Golgi complex component-related / COG complex component-relatedO.I.H.G.S.X.
0.5066.90.93HVSMEh0085G19f_atHVSMEh0085G19f--3e+0At1g75510transcription initiation factor IIF beta subunit (TFIIF-beta) family proteinO.I.H.G.S.X.
0.5066.90.93HY02G07u_atHY02G07u--4e+0At2g28420lactoylglutathione lyase family protein / glyoxalase I family proteinO.I.H.G.S.X.
0.4458.90.93Contig12027_atContig12027ORG4-2e-3At2g06010ORG4 (OBP3-RESPONSIVE GENE 4)O.I.H.G.S.X.
0.4255.20.93Contig6325_atContig6325--4e-1At5g25490zinc finger (Ran-binding) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.499.7GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
5.197.3GSM238439Embryo 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.296.3GSM238438Embryo 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM238437Embryo 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM146365Maythorpe Root Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.294.3GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.194.1GSM160744drought control rep2GSE6990Barley drought stressLink to GEO
3.093.8GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
2.893.1GSM160815drought control rep3GSE6990Barley drought stressLink to GEO
2.792.7GSM261032Dicktoo control-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage