Co-expression analysis

Gene ID	Contig2421_at
Gene name
Homology with Arabidopsis	Similar to At5g02380: MT2B (METALLOTHIONEIN 2B) (HF=7e-2)
Module size	8 genes
NF	0.50
%ile	70.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	58.9	0.90	Contig2421_at	Contig2421	-	-	7e-2	At5g02380	MT2B (METALLOTHIONEIN 2B)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.92	Contig2750_s_at	Contig2750	-	-	4e-15	At2g33150	PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.93	Contig2748_at	Contig2748	-	-	1e-2	At4g20130	PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.92	Contig26180_at	Contig26180	-	-	4e+0	At5g05690	CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.92	Contig14353_at	Contig14353	-	-	9e-3	At1g49950	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.93	Contig6587_s_at	Contig6587	-	-	1e-4	At3g52470	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.92	Contig67_at	Contig67	-	-	4e-40	At2g37600	60S ribosomal protein L36 (RPL36A)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.92	HVSMEb0005F19r2_at	HVSMEb0005F19r2	-	-	3e-1	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	98.1	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.6	97.7	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.6	97.7	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.4	97.5	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.1	97.3	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.0	97.2	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.9	97.1	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.8	97.0	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM71153	Barke stress and unstress replicate 4	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.8	95.7	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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