Co-expression analysis

Gene ID	Contig24207_at
Gene name
Homology with Arabidopsis	Similar to At5g57850: aminotransferase class IV family protein (HF=4e-4)
Module size	35 genes
NF	0.93
%ile	99.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.4	0.99	Contig24207_at	Contig24207	-	-	4e-4	At5g57850	aminotransferase class IV family protein	O.I.	H.G.	S.X.	Please select
0.99	100.0	0.98	Contig9959_at	Contig9959	-	-	4e-4	At1g02840	SR1	O.I.	H.G.	S.X.	Please select
0.99	100.0	0.98	EBan01_SQ002_F13_at	EBan01_SQ002_F13	-	-	3e-1	At3g52230	unknown protein	O.I.	H.G.	S.X.	Please select
0.99	100.0	0.98	Contig8820_at	Contig8820	-	-	2e+0	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select
0.99	100.0	0.99	Contig20968_at	Contig20968	-	-	2e-6	At1g15110	phosphatidyl serine synthase family protein	O.I.	H.G.	S.X.	Please select
0.97	99.6	0.98	Contig3096_s_at	Contig3096	-	-	3e+0	At3g17170	RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3)	O.I.	H.G.	S.X.	Please select
0.97	99.6	0.98	Contig6434_at	Contig6434	-	-	3e-9	At1g07310	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.97	99.6	0.98	Contig10011_at	Contig10011	-	-	1e+0	At2g43290	MSS3 (multicopy suppressors of snf4 deficiency in yeast 3)	O.I.	H.G.	S.X.	Please select
0.96	99.4	0.98	Contig25064_at	Contig25064	-	-	1e+0	At1g54215	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.96	99.4	0.98	Contig14328_at	Contig14328	-	-	5e-8	At4g08150	KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)	O.I.	H.G.	S.X.	Please select
0.96	99.4	0.98	Contig13888_at	Contig13888	-	-	3e-2	At5g19940	plastid-lipid associated protein PAP-related / fibrillin-related	O.I.	H.G.	S.X.	Please select
0.96	99.4	0.99	HM03M17u_at	HM03M17u	-	-	4e-3	At2g36100	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.95	99.2	0.98	Contig11217_at	Contig11217	-	-	6e-4	At3g44750	HDA3 (HISTONE DEACETYLASE 3)	O.I.	H.G.	S.X.	Please select
0.93	98.7	0.97	EBan01_SQ005_A15_at	EBan01_SQ005_A15	-	-	3e+0	At1g10660	unknown protein	O.I.	H.G.	S.X.	Please select
0.93	98.7	0.98	EBan01_SQ005_B22_s_at	EBan01_SQ005_B22	-	-	5e+0	At1g30630	coatomer protein epsilon subunit family protein / COPE family protein	O.I.	H.G.	S.X.	Please select
0.93	98.7	0.98	Contig20753_at	Contig20753	-	-	5e-7	At2g20900	diacylglycerol kinase, putative	O.I.	H.G.	S.X.	Please select
0.92	98.4	0.98	Contig394_at	Contig394	-	-	1e+0	At5g42850	-	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.98	EBan01_SQ003_J01_at	EBan01_SQ003_J01	-	-	2e-1	At2g41905	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.99	Contig18318_at	Contig18318	-	-	2e+0	At4g23432	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.97	Contig8819_s_at	Contig8819	-	-	2e+0	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.97	Contig8821_at	Contig8821	-	-	4e-9	At5g45190	cyclin family protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.97	HVSMEk0006G04r2_at	HVSMEk0006G04r2	-	-	2e-1	At4g37790	HAT22	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.98	Contig3097_at	Contig3097	-	-	4e+0	At5g46730	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.90	95.7	0.97	EBpi01_SQ002_G19_at	EBpi01_SQ002_G19	-	-	2e+0	At3g16440	ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B)	O.I.	H.G.	S.X.	Please select
0.90	95.7	0.97	Contig949_at	Contig949	-	-	8e-28	At1g29910	CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.90	95.7	0.98	Contig17376_at	Contig17376	-	-	2e+0	At5g16090	-	O.I.	H.G.	S.X.	Please select
0.89	95.4	0.98	Contig1247_at	Contig1247	-	-	7e-4	At2g39050	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.88	95.2	0.98	Contig12689_at	Contig12689	-	-	1e+0	At5g44860	unknown protein	O.I.	H.G.	S.X.	Please select
0.88	95.2	0.98	Contig20288_at	Contig20288	-	-	1e+0	At1g22970	unknown protein	O.I.	H.G.	S.X.	Please select
0.87	95.0	0.97	Contig19270_at	Contig19270	-	-	2e+0	At1g04970	lipid-binding serum glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.87	95.0	0.98	Contig10604_at	Contig10604	-	-	1e-10	At1g18650	PDCB3 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.85	94.5	0.97	Contig9898_at	Contig9898	-	-	3e-3	At2g35780	scpl26 (serine carboxypeptidase-like 26)	O.I.	H.G.	S.X.	Please select
0.84	94.3	0.97	Contig15860_at	Contig15860	-	-	1e-13	At1g34420	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.97	Contig13707_at	Contig13707	-	-	3e-5	At4g05090	inositol monophosphatase family protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.97	EBan01_SQ004_O17_at	EBan01_SQ004_O17	-	-	4e+0	At5g64470	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
27.7	99.8	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
26.8	99.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
15.9	99.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.9	97.9	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.8	97.8	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.7	95.5	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.4	94.8	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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